HOMD ::Species:Granulicatella elegans

Species: Granulicatella elegans (HMT-0596) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella elegans

LINKS: Ecology Home | HMT-0596: [Body Sites Data] [Taxon Description] | Life Page: Granulicatella elegans

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Granulicatella elegans

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.03	0.01	1.19	0.54	0.81	0.15	0.02	0.21	0.03	0.03	0.01	0.02	0.02	0.02	0.04	0.02	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0.07	0.03	0.81	0.06	0.01	0.01	0.01	0	0	0	0.02	0	0	0	0
90^thp	0.05	0.05	0.01	2.20	1.48	0.81	0.24	0.03	0.21	0.04	0.06	0.03	0.03	0.02	0.04	0.08	0.04	0
Stdev	0.03	0.07	0.01	0.82	0.83	0	0.10	0.01	0.56	0.02	0.03	0.02	0.05	0	0.03	0.07	0.04	0.01
Prev(%)	16.67	16.96	0	86.67	50.15	100.00	50.00	14.29	27.27	10.64	0	0	3.33	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.10	0.08	3.16	1.10	1.00	0.25	0.26	0.26	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.22	0.16	9.28	3.57	3.97	0.85	0.71	0.40	0.06	0
Stdev	0.34	0.29	4.17	1.78	1.66	0.41	0.69	0.80	0.07	0
Prev(%)	41.56	37.66	77.92	76.62	72.73	54.55	45.45	53.25	31.17	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to G. adiacens and G. elegans were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.27	0.34	1.21	0.81	1.37	0.80	0.87	0.78	1.57	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.06	0.03	0.14	0.47	0.21	0.19	0.14	0.39	0
90^thp	0.55	0.63	3.28	1.88	2.38	1.67	1.63	1.58	3.26	0
Stdev	0.34	0.39	1.45	0.93	0.84	0.63	0.61	0.61	1.18	0.01
Prev(%)	92.57	98.65	95.27	99.32	99.32	99.32	100.00	98.65	100.00	7.69

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.04	2.11	0.99	0.89	0.35	0.14	0.18	0.02	0.07	0.02	0.03	0.13	0.10	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.10	5.66	3.31	2.90	0.76	0.38	0.33	0.05	0.11	0.05	0.03	0.35	0.21	0	0	0	0
Stdev	0.22	0.16	2.91	1.56	1.45	1.13	0.41	0.66	0.08	0.48	0.09	0.29	0.41	0.43	0	0	0	0
Prev(%)	41.06	44.37	82.52	77.40	77.85	56.15	45.24	54.67	32.26	24.33	20.11	18.70	31.03	23.04	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.06	3.52	1.64	1.71	0.24	0.24	0.27	0.02	0.05	0.14	0.12	0.20	0.23	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.11	0.13	8.55	5.12	4.77	0.68	0.57	0.56	0.04	0.10	0.07	0.07	0.37	0.60	0	0	0	0
Stdev	0.20	0.23	5.32	2.60	3.45	0.42	0.78	0.98	0.06	0.18	1.57	0.84	0.89	0.72	0	0	0	0
Prev(%)	44.69	46.10	81.97	77.92	77.49	66.96	52.96	55.47	27.49	26.82	22.29	20.99	25.52	32.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.08	0.05	1.43	0.23	0.31	0.14	0.06	0.14	0.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.13	3.70	0.50	0.86	0.40	0.14	0.38	0.08	0
Stdev	0.36	0.13	3.55	0.53	0.49	0.35	0.11	0.30	0.08	0.01
Prev(%)	58.11	55.88	76.74	88.57	85.71	86.00	84.85	83.87	80.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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