HOMD ::Genus:Haemophilus

Genus: Haemophilus

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus
Lower rank member(s): show[+]

[Species:Haemophilus aegyptius] [Species:Haemophilus ducreyi] [Species:Haemophilus haemolyticus] [Species:Haemophilus influenzae] [Species:Haemophilus parahaemolyticus]
[Species:Haemophilus parainfluenzae] [Species:Haemophilus paraphrohaemolyticus] [Species:Haemophilus pittmaniae] [Species:Haemophilus sp. HMT-036] [Species:Haemophilus sputorum]

LINKS: Ecology Home | Life Page: Haemophilus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Haemophilus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	4.06	5.35	0.22	16.93	17.70	9.82	10.58	3.94	8.26	8.89	0.53	0.19	0.17	0.89	0.01	0.42	0.11	0.13
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.61	0.42	0	5.30	4.47	9.82	4.33	0.41	1.27	0.90	0.05	0.01	0	0.89	0	0	0	0
90^thp	6.15	11.79	0.29	30.58	33.77	9.82	19.38	8.20	15.98	19.95	0.92	0.77	0.10	0.89	0.03	1.47	0.13	0.29
Stdev	7.06	6.14	0.62	10.48	12.11	0	8.08	3.42	7.29	7.88	1.21	0.35	0.68	0	0.01	0.81	0.56	0.49
Prev(%)	100.00	98.73	16.67	100.00	99.38	100.00	100.00	100.00	100.00	99.53	9.23	17.39	20.00	0	0	25.00	6.38	24.00

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.12	2.16	6.44	3.40	2.13	2.76	2.64	1.93	2.61	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0.91	0.36	0.25	0.16	0.03	0.05	0.02	0
90^thp	2.74	3.99	16.64	8.13	4.63	8.65	4.92	4.14	7.75	0.05
Stdev	2.19	5.76	6.54	4.44	3.07	4.04	9.30	3.14	4.56	0.03
Prev(%)	81.82	89.61	100.00	97.40	100.00	96.10	94.81	94.81	93.51	18.18

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.38	5.33	20.99	12.37	8.72	9.95	5.81	7.96	9.52	0.06
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.18	0.38	6.29	3.29	2.44	3.40	0.69	0.91	1.30	0
90^thp	6.77	14.36	35.78	23.48	15.86	18.73	12.61	15.91	20.73	0.15
Stdev	4.51	5.82	11.63	8.68	5.90	6.48	5.25	6.80	7.22	0.20
Prev(%)	97.30	99.32	100.00	100.00	100.00	100.00	100.00	100.00	100.00	30.07

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.82	1.31	6.65	3.78	1.92	2.36	1.68	1.46	1.85	0.10	0.05	0.05	0.14	0.33	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0.22	0.18	0.12	0.03	0.06	0.03	0.03	0	0	0	0	0	0	0	0	0
90^thp	2.02	2.54	16.79	9.19	4.77	6.29	3.67	3.74	5.16	0.13	0.10	0.09	0.37	0.41	0	0	0	0
Stdev	1.73	3.89	7.12	4.63	2.30	4.19	4.88	2.32	3.55	0.68	0.15	0.20	0.35	1.70	0	0	0	0
Prev(%)	88.74	91.39	99.30	97.94	97.99	91.54	97.32	95.33	96.13	46.67	37.07	37.68	54.60	56.68	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	5.09	8.56	30.67	27.82	17.91	13.32	9.77	11.27	13.88	0.62	1.34	1.77	2.52	3.08	0	0	0	0.10
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.25	0.49	2.77	7.48	5.55	3.49	0.87	1.37	1.28	0	0	0	0	0	0	0	0	0
90^thp	13.51	19.64	67.73	54.88	32.68	25.24	22.56	24.16	30.14	1.59	1.06	0.93	3.90	6.31	0	0	0	0.20
Stdev	6.50	9.79	24.64	18.54	11.63	9.30	10.14	10.44	11.69	1.39	5.63	7.71	8.36	8.67	0	0	0	0.32
Prev(%)	99.01	99.76	100.00	99.75	100.00	99.70	99.69	99.76	100.00	74.71	59.55	55.56	80.69	77.33	0	0	0	45.01

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.65	2.22	13.60	9.31	6.13	4.53	3.58	3.46	5.74	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.04	0.97	1.66	1.14	0.21	0.20	0.18	0.25	0
90^thp	3.03	7.28	35.00	19.80	12.42	10.75	9.72	9.34	15.84	0.04
Stdev	4.11	3.67	14.57	9.29	5.07	4.30	4.93	4.28	7.04	0.04
Prev(%)	95.95	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.69	3.51	0.08	17.78	20.28	11.61	7.32	4.59	5.25	5.28	0.23	0.05	0.13	0	0.03	0.18	0.09	0.04
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.24	0.18	0	3.94	3.54	11.61	3.42	0.17	0.77	0.54	0	0	0	0	0	0	0	0
90^thp	4.18	8.59	0.06	34.73	40.93	11.61	13.96	9.42	10.44	12.47	0.46	0.10	0.04	0	0	0.63	0.04	0.08
Stdev	5.86	4.78	0.26	13.06	15.18	0	5.32	7.10	5.26	5.31	0.82	0.13	0.60	0	0.11	0.45	0.63	0.32
Prev(%)	100.00	99.50	37.50	100.00	99.20	100.00	100.00	93.75	100.00	99.30	27.48	45.83	25.00	0	9.09	21.43	14.65	26.91

[Species:Haemophilus aegyptius]	[Species:Haemophilus ducreyi]	[Species:Haemophilus haemolyticus]	[Species:Haemophilus influenzae]	[Species:Haemophilus parahaemolyticus]
[Species:Haemophilus parainfluenzae]	[Species:Haemophilus paraphrohaemolyticus]	[Species:Haemophilus pittmaniae]	[Species:Haemophilus sp. HMT-036]	[Species:Haemophilus sputorum]

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