HOMD ::Species:Haemophilus parahaemolyticus

Species: Haemophilus parahaemolyticus (HMT-0945) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parahaemolyticus

LINKS: Ecology Home | HMT-0945: [Body Sites Data] [Taxon Description] | Life Page: Haemophilus parahaemolyticus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Haemophilus parahaemolyticus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.03	0	0.12	0.38	0.31	0.24	0.02	0.26	0.02	0.01	0	0	0.02	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0.01	0.02	0.31	0.01	0	0	0	0	0	0	0.02	0	0	0	0
90^thp	0.05	0.05	0.01	0.32	0.94	0.31	0.74	0.04	0.47	0.04	0.02	0.01	0	0.02	0	0.01	0	0
Stdev	0.02	0.07	0	0.17	0.91	0	0.36	0.02	0.51	0.03	0.01	0.01	0	0	0	0	0	0
Prev(%)	0	7.85	0	20.00	33.44	100.00	25.00	0	27.27	7.33	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0	0.49	0.07	0.11	0.04	0.04	0.09	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	1.45	0.17	0.19	0.09	0.10	0.23	0	0
Stdev	0.04	0.01	1.08	0.17	0.55	0.14	0.12	0.27	0.01	0
Prev(%)	16.88	15.58	57.14	55.84	53.25	31.17	32.47	38.96	9.09	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.04	0.05	0.85	0.58	0.47	0.39	0.55	1.05	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.12	0.08	2.68	1.11	0.92	0.96	1.09	3.33	0.05	0
Stdev	0.13	0.22	2.48	1.69	1.84	1.09	1.54	2.35	0.07	0
Prev(%)	25.68	27.03	52.03	62.84	55.41	61.49	55.41	70.27	23.65	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.35	0.12	0.12	0.10	0.12	0.16	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.92	0.19	0.29	0.18	0.19	0.35	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	1.11	0.38	0.39	0.39	0.52	0.53	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	44.06	47.95	46.98	34.62	38.69	44.00	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-035 and HMT-945 were assigned to each taxon in proportion to the abundance of HMT-035 and HMT-945 individually at these sites (AKE,BMU,HPA,SAL,SUBP,SUPP).

Because HMT-035 is not present individually, all equidistant reads were assigned to HMT-945 at this these sites (PTO,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0.08	3.32	2.02	1.28	0.57	1.70	1.81	0	0.03	0.10	0.19	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.13	0.12	11.35	5.54	3.31	1.62	3.08	5.01	0	0.05	0.04	0.03	0	0	0	0	0	0
Stdev	0.23	0.41	7.85	4.87	3.21	1.12	5.98	4.57	0	0.16	0.91	1.82	0	0	0	0	0	0
Prev(%)	48.15	47.56	67.90	74.19	71.87	73.21	65.73	78.10	0	15.71	16.88	13.89	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 035 and 945 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0.01	0.38	0.12	0.11	0.04	0.24	0.47	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	0.36	0.26	0.19	0.04	1.00	0.36	0.01	0
Stdev	0.02	0.03	1.81	0.36	0.36	0.13	0.51	1.86	0.08	0
Prev(%)	28.38	17.65	53.49	62.86	53.57	42.00	60.61	70.97	42.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0	0.05	0.51	0.49	0.30	0.37	0.27	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.49	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0.01	0	0.01	1.02	0.49	1.14	0.75	0.53	0.01	0	0	0	0	0	0	0	0
Stdev	0.01	0.08	0	0.21	2.27	0	0.56	1.13	0.59	0.02	0.01	0	0	0	0	0	0	0
Prev(%)	4.17	10.86	0	11.77	41.76	100.00	25.00	25.00	48.00	11.74	0.90	4.17	0	0	0	0	0	0

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