HOMD ::Species:Haemophilus parainfluenzae

Species: Haemophilus parainfluenzae (HMT-0718) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parainfluenzae

LINKS: Ecology Home | HMT-0718: [Body Sites Data] [Taxon Description] | Life Page: Haemophilus parainfluenzae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Haemophilus parainfluenzae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.44	4.44	0.18	8.21	9.63	3.61	7.33	3.21	5.71	7.78	0.40	0.13	0.03	0.64	0.01	0.27	0.10	0.11
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.44	0.28	0	0.47	1.62	3.61	3.13	0.34	0.49	0.73	0.04	0	0	0.64	0	0	0	0
90^thp	4.93	10.12	0.20	18.39	22.63	3.61	14.29	6.51	12.01	17.53	0.67	0.53	0.06	0.64	0.02	0.97	0.10	0.25
Stdev	6.28	5.25	0.54	7.79	9.81	0	5.76	2.84	6.14	6.95	1.06	0.24	0.04	0	0.01	0.49	0.49	0.42
Prev(%)	100.00	98.23	16.67	93.33	99.07	100.00	100.00	100.00	100.00	99.53	9.23	17.39	16.67	0	0	25.00	6.38	24.00

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.07	2.13	3.46	2.47	1.73	2.47	1.33	1.58	2.58	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0.04	0.08	0.21	0.16	0.02	0.03	0.02	0
90^thp	2.71	3.97	8.65	5.54	4.20	8.02	3.59	3.61	7.58	0.05
Stdev	2.17	5.74	5.29	3.91	2.75	3.67	1.89	2.84	4.53	0.03
Prev(%)	80.52	88.31	94.81	96.10	98.70	94.81	92.21	92.21	93.51	18.18

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.99	4.93	8.73	7.64	6.61	8.11	4.13	5.78	9.38	0.05
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.35	0.33	1.51	1.60	2.71	0.56	0.66	1.24	0
90^thp	6.28	12.43	21.48	18.41	12.34	15.37	8.41	12.54	20.66	0.15
Stdev	4.07	5.68	8.57	7.63	5.33	5.42	3.46	5.27	7.14	0.20
Prev(%)	97.30	99.32	100.00	100.00	100.00	100.00	100.00	100.00	100.00	30.07

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.76	1.31	3.42	2.48	1.51	2.05	1.00	1.16	1.85	0.05	0.02	0.02	0.05	0.26	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0.04	0.08	0.07	0.02	0.05	0.02	0.03	0	0	0	0	0	0	0	0	0
90^thp	1.73	2.54	11.48	5.42	3.74	5.36	2.78	3.21	5.16	0.12	0.04	0.02	0.16	0.24	0	0	0	0
Stdev	1.65	3.89	5.51	3.48	1.98	3.72	1.32	1.92	3.55	0.23	0.09	0.16	0.13	1.69	0	0	0	0
Prev(%)	86.75	91.39	95.11	97.26	95.97	90.77	96.43	93.33	96.13	43.00	26.44	21.53	40.80	39.63	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	4.88	8.31	22.77	24.01	14.96	12.13	7.78	9.03	13.82	0.58	1.25	1.58	2.52	3.08	0	0	0	0.10
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.21	0.48	1.43	5.03	4.79	3.04	0.75	0.94	1.28	0	0	0	0	0	0	0	0	0
90^thp	13.09	19.29	53.88	50.49	27.78	23.70	19.64	20.70	30.12	1.49	0.99	0.90	3.90	6.31	0	0	0	0.20
Stdev	6.25	9.63	21.75	18.28	10.11	8.61	8.02	8.71	11.66	1.34	5.36	6.65	8.36	8.67	0	0	0	0.32
Prev(%)	99.01	99.76	99.51	99.75	100.00	99.70	99.38	99.27	100.00	73.18	57.64	53.09	80.69	77.33	0	0	0	45.01

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.54	2.07	8.06	7.77	5.47	4.26	2.59	2.02	5.25	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.03	0.30	1.11	0.91	0.18	0.19	0.08	0.25	0
90^thp	2.79	7.19	22.30	17.43	11.61	10.27	6.15	5.81	15.82	0.02
Stdev	3.88	3.40	9.59	9.06	4.94	4.14	4.48	2.38	6.60	0.03
Prev(%)	93.24	100.00	100.00	100.00	100.00	98.00	100.00	100.00	100.00	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.56	3.20	0.08	9.25	10.01	2.92	5.13	1.44	3.54	5.17	0.18	0.05	0.02	0	0.03	0.14	0.09	0.04
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.23	0.16	0	0.57	1.42	2.92	2.55	0	0.23	0.49	0	0	0	0	0	0	0	0
90^thp	3.83	7.83	0.06	22.49	24.89	2.92	10.89	3.35	7.77	12.13	0.38	0.09	0.03	0	0	0.50	0.04	0.06
Stdev	5.85	4.42	0.26	9.15	10.74	0	3.76	1.54	4.41	5.23	0.64	0.12	0.06	0	0.11	0.35	0.63	0.31
Prev(%)	100.00	99.24	37.50	94.12	98.94	100.00	100.00	81.25	100.00	99.30	25.68	41.67	21.88	0	9.09	21.43	14.14	24.91

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