HOMD ::Species:Haemophilus paraphrohaemolyticus

Species: Haemophilus paraphrohaemolyticus (HMT-0035) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus paraphrohaemolyticus

LINKS: Ecology Home | HMT-0035: [Body Sites Data] [Taxon Description] | Life Page: Haemophilus paraphrohaemolyticus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Haemophilus paraphrohaemolyticus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0.07	0	0.41	0.73	0.24	0.16	0.02	0.10	0.04	0.01	0.01	0	0.02	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0.07	0.04	0.24	0.03	0	0.01	0.01	0	0	0	0.02	0	0	0	0
90^thp	0.08	0.12	0	0.81	1.88	0.24	0.34	0.04	0.25	0.09	0.03	0.01	0.01	0.02	0	0.02	0	0
Stdev	0.07	0.27	0	0.68	1.73	0	0.14	0.02	0.12	0.07	0.04	0.03	0.01	0	0	0.01	0	0
Prev(%)	8.33	18.48	0	13.33	31.27	100.00	12.50	0	22.73	7.09	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0	0.49	0.07	0.11	0.04	0.04	0.09	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	1.45	0.17	0.19	0.09	0.10	0.23	0	0
Stdev	0.04	0.01	1.08	0.17	0.55	0.14	0.12	0.27	0.01	0
Prev(%)	16.88	15.58	57.14	55.84	53.25	31.17	32.47	38.96	9.09	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.12	0.11	2.78	0.51	0.74	0.24	0.11	0.06	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0.19	11.40	1.16	2.73	0.66	0.27	0.18	0.02	0
Stdev	0.51	0.69	6.65	1.63	1.82	0.69	0.37	0.22	0.05	0
Prev(%)	26.35	29.05	39.87	37.16	37.16	35.81	29.05	27.70	15.54	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0	0.52	0.08	0.10	0.03	0.02	0.02	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.03	0	1.11	0.12	0.14	0.04	0.02	0.02	0	0	0	0	0	0	0	0	0	0
Stdev	0.11	0	1.55	0.51	0.48	0.11	0.14	0.08	0	0	0	0	0	0	0	0	0	0
Prev(%)	19.20	0	41.26	27.40	31.54	18.46	14.58	14.00	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-035 and HMT-945 were assigned to each taxon in proportion to the abundance of HMT-035 and HMT-945 individually at these sites (AKE,BMU,HPA,SAL,SUBP,SUPP).

Because HMT-035 is not present individually, all equidistant reads were assigned to HMT-945 at this these sites (PTO,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.10	3.88	0.88	1.33	0.18	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.18	0.12	13.48	2.17	3.97	0.36	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.51	0.49	8.88	2.93	4.29	0.61	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	45.43	40.73	66.42	58.56	52.94	52.08	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 035 and 945 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0.02	0.56	0.12	0.10	0.03	0.53	0.47	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	0.82	0.35	0.26	0.05	1.06	1.71	0.02	0
Stdev	0.01	0.11	2.09	0.23	0.21	0.10	1.41	1.07	0.10	0
Prev(%)	37.84	23.53	53.49	74.29	64.29	50.00	57.58	64.52	35.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.07	0	0.29	0.90	0.11	0.06	0	0.03	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.11	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.09	0	0.84	2.48	0.11	0.15	0	0.05	0	0	0	0	0	0	0	0	0
Stdev	0.08	0.46	0	0.82	3.02	0	0.18	0	0.11	0.08	0	0.01	0	0	0	0	0	0
Prev(%)	12.50	22.48	0	11.77	30.32	100.00	12.50	0	16.00	8.45	0.45	4.17	0	0	0	0	0	0.36

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