HOMD ::Species:Kingella denitrificans

Species: Kingella denitrificans (HMT-0582) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; Kingella denitrificans

LINKS: Ecology Home | HMT-0582: [Body Sites Data] [Taxon Description] | Life Page: Kingella denitrificans

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Kingella denitrificans

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.27	0.05	0.01	0.04	0.01	0.06	0.01	0.01	0.02	0.01	0.01	0.02	0.28	0	0.04	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.02	0.02	0	0	0.01	0.01	0.01	0	0	0	0	0	0	0.28	0	0	0	0
90^thp	0.39	0.66	0.10	0.03	0.08	0.01	0.11	0.02	0.03	0.03	0.01	0.01	0.02	0.28	0	0.10	0	0
Stdev	0.21	0.53	0.12	0.01	0.09	0	0.08	0.01	0.01	0.02	0.01	0.06	0.09	0	0	0.11	0.01	0.01
Prev(%)	29.17	41.77	4.17	0	6.50	0	12.50	14.29	4.55	4.26	0	0	3.33	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.19	0.13	0	0.03	0.01	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.23	0.44	0	0.06	0.02	0.04	0	0	0	0
Stdev	0.65	0.32	0.01	0.11	0.02	0.09	0.01	0.01	0.01	0
Prev(%)	31.17	40.26	10.39	16.88	12.99	15.58	6.49	6.49	9.09	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to K. denitrificans, K. sp. HMT 932, and Eikenella sp. HMT 011 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.06	0.09	0	0.01	0.01	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.14	0.24	0	0.03	0.02	0.04	0.01	0.01	0	0
Stdev	0.16	0.17	0.01	0.05	0.01	0.04	0.01	0.02	0.01	0
Prev(%)	58.78	67.57	10.13	28.38	23.65	32.43	16.22	14.87	10.81	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.19	0.01	0.04	0.02	0.03	0.01	0	0	0.01	0	0.01	0.01	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.42	0.51	0.01	0.08	0.02	0.07	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.60	0.52	0.08	0.18	0.08	0.09	0.04	0	0	0.04	0	0.06	0.08	0.03	0	0	0	0
Prev(%)	36.42	43.05	15.38	24.66	16.78	19.23	10.12	0	0	5.33	0	3.68	4.60	3.23	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.44	0.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.72	1.10	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.09	1.11	0.23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	69.14	79.02	34.57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.05	0.01	0	0	0.02	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.06	0.01	0	0.01	0.06	0.01	0	0	0	0
Stdev	0.22	0.04	0.01	0.01	0.04	0	0	0.02	0	0
Prev(%)	24.32	23.53	13.95	17.14	39.29	20.00	15.15	16.13	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0.28	0.03	0	0.03	0	0.04	0	0	0	0	0	0.02	0.09	0	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.09	0	0	0	0
90^thp	0.41	0.79	0.05	0	0.04	0	0.10	0	0	0	0	0	0	0.09	0	0	0	0
Stdev	0.27	0.83	0.12	0	0.13	0	0.12	0	0	0.01	0	0	0.11	0	0	0.08	0.01	0.01
Prev(%)	37.50	46.21	20.83	0	15.43	0	12.50	6.25	4.00	6.34	0	0	3.13	100.00	0	7.14	0.51	0.18

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