HOMD ::Order:Lachnospirales

Order: Lachnospirales

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Full Lineage: Bacteria; Bacillota; Clostridia; Lachnospirales
Lower rank member(s): [Family:Lachnospiraceae]
Genera:

LINKS: Ecology Home | Life Page: Lachnospirales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Lachnospirales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.65	0.50	1.22	0.25	0.56	0.63	2.55	4.24	3.06	3.82	0.56	0.06	0.02	0.46	0.04	0.26	3.48	3.80
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.19	0.05	0.64	0.04	0.11	0.63	0.85	3.87	1.19	1.28	0.01	0	0	0.46	0	0	0	0.48
90^thp	1.21	1.18	1.80	0.68	1.22	0.63	4.76	4.78	4.53	6.83	1.46	0.16	0.04	0.46	0.10	0.71	0.81	8.71
Stdev	0.42	0.63	0.95	0.30	0.67	0	1.96	0.41	1.93	2.54	1.18	0.12	0.02	0	0.06	0.48	13.55	5.37
Prev(%)	79.17	72.91	87.50	40.00	31.27	100.00	87.50	100.00	95.45	100.00	9.23	4.35	0	0	0	12.50	10.64	90.67

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.72	0.61	0.09	0.52	1.52	3.35	4.24	3.43	3.50	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0	0	0.04	0.30	1.11	0.85	0.84	0.75	0
90^thp	1.58	1.86	0.27	1.41	3.33	5.90	8.34	6.07	5.74	0.03
Stdev	0.66	0.84	0.19	0.53	1.17	2.85	2.95	2.41	2.28	0.02
Prev(%)	90.91	84.42	62.34	94.81	100.00	97.40	98.70	100.00	100.00	23.38

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.07	0.96	0.18	0.91	2.51	4.53	5.37	4.49	4.64	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.05	0	0.06	0.68	1.38	1.28	1.30	1.08	0
90^thp	1.99	2.12	0.49	2.09	4.91	7.99	10.91	9.75	10.01	0
Stdev	1.03	1.20	0.41	1.16	2.23	3.62	4.01	3.46	3.81	0
Prev(%)	97.97	95.27	66.22	97.97	99.32	100.00	99.32	100.00	100.00	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.67	0.40	0.18	0.58	2.03	3.79	4.36	3.86	4.04	0.03	0.10	0.02	0.17	0.22	1.00	1.24	0.99	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.01	0	0.03	0.28	0.71	1.16	1.00	1.00	0	0	0	0	0	0	0	0	0
90^thp	1.39	1.15	0.52	1.33	4.21	8.56	8.74	7.05	7.71	0.01	0.05	0	0.29	0.40	0.22	0.07	0.07	0
Stdev	0.72	0.56	0.36	0.79	1.86	4.02	3.00	2.53	2.85	0.24	1.30	0.13	0.56	0.75	5.44	7.70	7.13	0
Prev(%)	95.36	91.39	72.73	92.47	99.33	95.39	98.81	100.00	100.00	14.00	24.43	10.20	28.16	35.48	32.39	25.68	19.74	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.20	0.88	0.22	1.53	4.72	6.18	7.90	7.07	7.34	0.08	0.04	0.10	0.14	0.45	0.83	1.26	1.16	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.04	0	0.15	1.21	2.00	1.82	2.00	1.88	0	0	0	0	0	0	0	0	0
90^thp	2.44	2.34	0.50	3.47	8.99	11.22	15.04	13.93	14.18	0.06	0.04	0.06	0.30	1.75	0.14	0.07	0.02	0
Stdev	1.01	1.07	0.57	1.77	3.45	4.72	5.56	5.27	5.11	0.63	0.20	0.65	0.50	1.09	5.19	7.88	7.96	0.13
Prev(%)	97.28	95.61	57.04	96.77	98.98	100.00	98.75	100.00	99.76	18.01	16.56	14.81	18.62	40.00	31.03	16.94	13.09	3.65

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.91	0.69	0.76	0.47	0.76	1.24	2.18	2.12	2.28	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.04	0	0	0.04	0.03	0.27	0.20	0.01	0
90^thp	2.43	1.67	1.61	1.15	1.53	2.75	5.47	6.09	6.87	0
Stdev	1.16	0.80	1.67	0.65	1.03	1.22	2.37	2.51	3.25	0
Prev(%)	97.30	100.00	95.35	91.43	100.00	98.00	100.00	100.00	95.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.51	0.41	0.71	0.13	0.38	0.70	2.20	2.08	2.40	3.23	0.06	0	0	0	0	0.11	0.01	0.27
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.11	0	0.07	0	0	0.70	0.77	0	0.42	1.22	0	0	0	0	0	0	0	0
90^thp	1.05	0.94	1.61	0.44	1.15	0.70	4.35	4.26	4.16	5.46	0	0	0	0	0	0	0	0
Stdev	0.37	0.52	0.62	0.24	0.76	0	1.84	1.89	1.83	1.68	0.50	0.01	0	0	0.01	0.42	0.18	1.69
Prev(%)	100.00	85.10	100.00	58.82	70.48	100.00	100.00	81.25	92.00	99.53	1.35	4.17	0	0	9.09	7.14	1.51	6.18

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