HOMD ::Species:Lactobacillus iners

Species: Lactobacillus iners (HMT-0838) Primary Body Site: Vaginal

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus iners

LINKS: Ecology Home | HMT-0838: [Body Sites Data] [Taxon Description] | Life Page: Lactobacillus iners

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Lactobacillus iners

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.01	0.01	0.02	0.02	0	0.01	0.01	0.07	0.01	0.04	0.04	0.04	9.02	14.18	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.02	0	0	0	0	0	0	0	0.04	0.01	0.01	0.01	0
90^thp	0.01	0.01	0	0.02	0.03	0.02	0.04	0.01	0.01	0.01	0.01	0.03	0.04	0.04	0.07	21.64	70.65	0
Stdev	0	0	0	0.01	0.01	0	0.04	0	0.01	0.01	0.45	0.01	0.14	0	0.04	25.40	28.42	0.01
Prev(%)	0	0	0	0	0	0	0	0	0	0	1.54	0	3.33	0	0	12.50	42.55	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.01	0	0	0.01	0	0.02	0.07	0.04	0.12	0.59	0.58	21.27	21.72	22.80	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.01	0	0	0	0	0	0.05	0.05	0.04	2.18	1.26	77.03	75.09	89.37	0
Stdev	0	0	0	0.06	0	0	0.04	0	0.18	0.40	0.19	1.40	1.68	2.22	32.03	32.88	35.99	0
Prev(%)	0	0	0	13.01	0	0	6.55	0	9.68	19.00	20.98	18.41	33.33	31.34	71.83	62.16	65.79	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0	0.03	0.05	0.12	0	0.03	0.01	0.01	0.08	0.48	0.25	0.50	1.24	20.03	19.72	20.13	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.13	0.11	0.11	0.81	1.03	78.60	79.52	87.33	0
Stdev	0.12	0	0.32	0.79	1.74	0	0.33	0.08	0.18	0.31	4.48	2.95	1.77	6.54	32.08	32.25	34.15	0.06
Prev(%)	7.16	0	8.89	8.69	9.97	0	9.35	7.54	7.79	21.07	18.79	19.44	25.52	34.67	60.92	65.03	59.16	5.60

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0
Prev(%)	1.35	0	0	0	3.57	0	3.03	0	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0.01	0	0.48	0	0.46	0	0.03	0	23.17	21.46	20.08	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0.02	0	0	0	0	0.01	0.02	0	51.76	84.45	85.82	0
Stdev	0	0	0	0	0	0	0.02	0	2.43	0	6.65	0.01	0.12	0	29.58	35.64	33.42	0
Prev(%)	0	0.25	0	0	0	0	12.50	0	4.00	0	1.35	12.50	15.63	0	54.55	42.86	45.45	0.36

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