HOMD ::Species:Lactococcus lactis

Species: Lactococcus lactis (HMT-0804) Primary Body Site: Environmental

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus lactis

LINKS: Ecology Home | HMT-0804: [Body Sites Data] [Taxon Description] | Life Page: Lactococcus lactis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Lactococcus lactis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0.01	0	0.01	0	0	0	0.01	0.01	0	0.13	0	0	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.13	0	0	0	0
90^thp	0	0	0	0	0	0	0.02	0	0	0	0.03	0.01	0.01	0.13	0	0	0	0.01
Stdev	0	0	0	0	0.05	0	0.02	0	0	0	0.03	0.01	0.01	0	0	0	0.01	0.02
Prev(%)	0	0	0	0	1.24	0	0	0	0	0.24	0	0	0	0	0	0	0	2.40

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0.22	0.04	0.06	0.14	0.12	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.05	0.01	0.01	0.26	0.18	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	3.43	0.40	0.74	0.45	0.53	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	19.00	14.08	14.73	29.31	22.58	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0	0	0	0	0.02	0	0	0	0.06	0.06	0.10	0.17	0.14	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.09	0.04	0.02	0.32	0.27	0	0	0	0
Stdev	0.64	0	0	0	0	0.12	0	0	0	0.39	0.50	1.37	0.71	0.63	0	0	0	0
Prev(%)	2.72	0	0	0	0	9.23	0	0	0	20.69	13.69	11.73	31.72	29.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.01
Stdev	0	0	0	0	0	0	0	0	0	0.02
Prev(%)	5.41	2.94	4.65	2.86	3.57	8.00	6.06	3.23	2.50	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0.04	0	0	0	0	0	0.14	0.01	0	0	0	0	0	0.01
Prev(%)	0	0.51	0	0	1.06	0	0	0	0	0.94	1.80	4.17	3.13	0	0	0	0	3.46

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