HOMD ::Genus:Lancefieldella

Genus: Lancefieldella

Full Lineage: Bacteria; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Lancefieldella
Lower rank member(s): [Species:Lancefieldella parvula] [Species:Lancefieldella rimae] [Species:Lancefieldella sp. HMT-199]

LINKS: Ecology Home | Life Page: Lancefieldella

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Lancefieldella

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.03	0.55	0.01	0.07	0.06	0.60	0.50	0.42	0.71	0.03	0	0	0.07	0.02	0	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0	0.01	0	0	0.06	0.10	0.13	0.02	0.06	0	0	0	0.07	0	0	0	0
90^thp	0.30	0.06	2.19	0.02	0.16	0.06	1.21	0.99	1.23	1.59	0.05	0.01	0	0.07	0.07	0.01	0.01	0
Stdev	0.22	0.08	0.88	0.03	0.12	0	0.66	0.41	0.53	0.71	0.08	0	0	0	0.05	0.01	0.07	0.10
Prev(%)	41.67	16.71	54.17	0	9.29	100.00	62.50	85.71	59.09	95.74	3.08	0	0	0	0	0	0	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.12	0.03	0.01	0.09	0.46	0.71	0.84	0.56	0.98	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.04	0	0	0.01	0.03	0
90^thp	0.26	0.10	0.02	0.22	1.18	1.80	2.04	1.24	2.76	0
Stdev	0.28	0.05	0.05	0.18	0.63	0.86	0.96	0.89	1.13	0
Prev(%)	55.84	33.77	16.88	62.34	90.91	83.12	88.31	89.61	90.91	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.04	0.01	0.08	0.38	0.52	0.59	0.41	0.64	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.06	0.05	0	0.02	0
90^thp	0.29	0.11	0.03	0.23	0.91	1.16	1.54	0.90	1.50	0
Stdev	0.39	0.09	0.06	0.14	0.48	0.55	0.59	0.69	0.72	0
Prev(%)	50.68	36.49	14.87	62.84	87.16	94.59	94.59	84.46	90.54	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.01	0.02	0.07	0.41	0.60	0.65	0.49	0.82	0.01	0.01	0.02	0.04	0.03	0.04	0.02	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0.01	0.03	0	0	0	0	0	0	0	0	0
90^thp	0.18	0.04	0.04	0.14	1.09	1.44	1.56	1.03	2.08	0.01	0.01	0	0.05	0	0	0	0	0
Stdev	0.36	0.03	0.06	0.14	0.59	0.75	0.71	0.74	0.95	0.04	0.04	0.13	0.19	0.15	0.21	0.19	0.09	0
Prev(%)	51.66	31.13	24.48	63.70	83.22	79.23	87.50	90.67	95.48	11.00	10.63	7.93	14.37	9.68	8.45	5.41	3.95	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0	0.03	0.16	0.81	0.77	0.94	0.66	1.05	0	0.05	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.05	0.01	0.02	0.05	0	0	0	0	0	0	0	0	0
90^thp	0.27	0	0.07	0.40	1.91	1.71	2.49	1.65	2.82	0	0.01	0	0	0	0	0	0	0
Stdev	0.37	0	0.13	0.41	1.07	0.89	1.13	0.92	1.29	0	0.48	0	0	0	0	0	0	0
Prev(%)	57.78	0	19.01	60.30	86.44	92.56	90.97	91.48	95.13	0	10.83	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.06	0.28	0.48	0.10	0.22	1.37	0.71	0.75	0.97	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.01	0.08	0.12	0.03	0	0
90^thp	2.17	1.01	0.58	0.30	0.56	5.32	1.53	1.41	2.31	0
Stdev	4.05	0.47	1.41	0.14	0.23	2.07	0.69	1.47	1.50	0
Prev(%)	85.14	91.18	67.44	97.14	92.86	100.00	100.00	96.77	97.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.02	0.40	0.01	0.07	0.10	0.79	0.51	0.82	1.01	0.01	0	0	0	0.01	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.10	0.03	0	0	0.06	0	0	0	0	0	0	0	0
90^thp	0.33	0.05	1.64	0	0.17	0.10	1.65	1.61	1.94	2.31	0	0	0	0	0	0	0	0
Stdev	0.22	0.09	0.68	0.02	0.23	0	0.91	0.73	1.80	1.03	0.07	0	0	0	0.02	0	0.03	0.14
Prev(%)	54.17	25.76	62.50	11.77	40.16	100.00	87.50	68.75	76.00	96.95	1.80	0	0	0	9.09	0	2.02	0.91

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