HOMD ::Species:Lancefieldella rimae

Species: Lancefieldella rimae (HMT-0750) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Lancefieldella; Lancefieldella rimae

LINKS: Ecology Home | HMT-0750: [Body Sites Data] [Taxon Description] | Life Page: Lancefieldella rimae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Lancefieldella rimae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0.01	0.26	0	0.01	0	0.04	0.01	0.03	0.01	0	0	0	0.01	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0.02	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.15	0.03	0.90	0.01	0.03	0	0.07	0.02	0.07	0.02	0	0	0	0.01	0.01	0	0	0
Stdev	0.08	0.06	0.47	0	0.02	0	0.03	0.01	0.05	0.01	0.01	0	0	0	0.01	0	0	0
Prev(%)	25.00	8.35	45.83	0	0.62	0	0	0	9.09	1.65	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.06	0.02	0	0.01	0.01	0.03	0.01	0.10	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.14	0.05	0	0.05	0.03	0.11	0.02	0.09	0	0
Stdev	0.18	0.06	0.01	0.03	0.02	0.05	0.03	0.57	0.01	0
Prev(%)	33.78	18.24	1.35	17.57	16.89	40.54	13.51	27.03	10.13	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0	0	0	0	0	0.01	0.11	0	0	0	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.09	0	0	0.01	0	0	0.01	0.08	0	0	0	0	0	0	0	0	0	0
Stdev	0.13	0	0	0.01	0	0	0.09	0.57	0	0	0.01	0.02	0.09	0	0	0	0	0
Prev(%)	35.10	0	0	15.75	0	0	11.31	30.00	0	0	2.01	1.42	2.87	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0	0	0	0	0	0.03	0.09	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.14	0	0	0	0	0	0.04	0.12	0	0	0	0	0	0	0	0	0	0
Stdev	0.24	0	0	0	0	0	0.14	0.41	0	0	0	0	0	0	0	0	0	0
Prev(%)	39.26	0	0	0	0	0	16.82	31.63	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.70	0.12	0	0.03	0.01	0.04	0.01	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.83	0.23	0	0.06	0.02	0.08	0.02	0.05	0.01	0
Stdev	3.82	0.33	0.01	0.09	0.01	0.11	0.02	0.02	0.01	0
Prev(%)	62.16	64.71	25.58	48.57	50.00	74.00	57.58	48.39	32.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0.01	0.26	0	0	0	0.01	0	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.16	0.02	0.97	0	0	0	0.03	0	0.04	0	0	0	0	0	0	0	0	0
Stdev	0.09	0.07	0.48	0	0.02	0	0.02	0	0.04	0.01	0	0	0	0	0	0	0	0
Prev(%)	37.50	13.89	62.50	0	7.18	0	37.50	0	20.00	3.52	0.45	0	0	0	0	0	0	0

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