HOMD ::Genus:Leptotrichia

Genus: Leptotrichia

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia
Lower rank member(s): show[+]

[Species:Leptotrichia buccalis] [Species:Leptotrichia hofstadii] [Species:Leptotrichia hongkongensis] [Species:Leptotrichia shahii] [Species:Leptotrichia sp. HMT-218]
[Species:Leptotrichia sp. HMT-221] [Species:Leptotrichia sp. HMT-223] [Species:Leptotrichia sp. HMT-225] [Species:Leptotrichia sp. HMT-417] [Species:Leptotrichia sp. HMT-463]
[Species:Leptotrichia sp. HMT-498] [Species:Leptotrichia sp. HMT-847] [Species:Leptotrichia sp. HMT-879] [Species:Leptotrichia sp. HMT-909] [Species:Leptotrichia wadei]

LINKS: Ecology Home | Life Page: Leptotrichia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Leptotrichia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.20	1.36	1.85	0.16	0.47	0.11	0.55	3.74	1.93	1.60	2.94	0.02	0.01	0.05	0.01	0.84	0.83	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.07	0.06	0.12	0.01	0.04	0.11	0.09	0.15	0.08	0.06	0.01	0	0	0.05	0	0	0	0
90^thp	2.61	3.34	3.48	0.29	1.05	0.11	1.38	10.16	3.73	4.52	12.00	0.07	0.03	0.05	0.02	2.01	3.86	0.01
Stdev	1.87	1.75	2.93	0.22	1.23	0	0.63	6.91	2.56	2.59	5.97	0.04	0.01	0	0.01	2.30	1.92	0.09
Prev(%)	66.67	80.25	54.17	46.67	22.29	100.00	12.50	100.00	54.55	85.58	3.08	0	0	0	0	12.50	0	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.60	2.40	0.21	0.48	0.63	0.52	3.12	2.45	1.89	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.01	0	0.07	0.05	0.02	0
90^thp	4.42	7.77	0.18	1.01	1.59	1.61	7.93	7.48	5.77	0
Stdev	2.36	3.11	1.04	1.11	0.86	0.71	4.29	3.67	3.05	0
Prev(%)	85.71	88.31	49.35	87.01	89.61	81.82	93.51	94.81	90.91	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.27	3.79	0.23	0.78	1.35	1.07	4.93	4.07	2.97	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.07	0	0.03	0.04	0.11	0.25	0.11	0.04	0
90^thp	6.11	8.49	0.41	1.98	3.56	2.84	15.37	12.12	11.44	0
Stdev	3.03	4.36	0.82	1.14	2.42	1.36	6.57	5.48	4.86	0
Prev(%)	91.89	93.92	57.43	91.89	93.24	95.95	96.62	96.62	92.57	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.81	2.46	0.38	0.75	1.10	0.69	4.21	3.36	2.98	0.03	0.05	0.03	0.21	0.15	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.03	0	0.01	0.02	0	0.10	0.06	0.02	0	0	0	0	0	0	0	0	0
90^thp	4.90	6.89	0.57	1.89	2.75	1.67	11.85	10.19	9.18	0.08	0.06	0.03	0.65	0.48	0	0	0	0
Stdev	2.74	3.34	1.47	1.50	1.85	1.00	5.58	4.51	4.84	0.08	0.25	0.18	0.65	0.40	0	0	0	0
Prev(%)	92.72	94.70	71.33	91.78	94.63	83.85	96.13	98.00	94.19	26.00	23.56	14.73	34.48	29.95	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.44	3.38	0.58	1.45	2.09	1.40	6.49	5.30	4.27	0	0.08	0.17	0.45	0.18	0	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.06	0	0.03	0.05	0.11	0.11	0.14	0.04	0	0	0	0	0	0	0	0	0
90^thp	6.16	8.72	1.41	3.82	5.32	3.58	17.51	14.40	12.93	0	0.05	0.11	0.64	0.35	0	0	0	0
Stdev	3.15	4.25	1.63	2.30	3.10	1.82	7.92	6.39	6.32	0	0.57	1.87	1.92	0.73	0	0	0	0.18
Prev(%)	93.33	93.42	67.16	91.81	92.07	95.54	94.70	96.59	95.13	0	19.43	22.22	35.86	29.33	0	0	0	4.62

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.12	8.04	1.22	1.33	1.28	0.92	4.07	3.14	3.66	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.50	0.01	0.05	0.07	0.02	0.16	0.15	0.02	0
90^thp	12.17	22.14	4.42	3.43	2.87	2.30	10.27	7.01	15.31	0
Stdev	7.90	9.23	2.35	1.86	2.26	1.77	4.36	3.98	6.39	0.01
Prev(%)	98.65	100.00	97.67	100.00	100.00	98.00	100.00	100.00	100.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.42	1.94	1.26	0.16	0.56	0.21	0.53	3.30	2.71	2.27	0.04	0	0	0	0	0.51	0.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.10	0.07	0	0	0.21	0.12	0.14	0.22	0.18	0	0	0	0	0	0	0	0
90^thp	3.13	4.51	2.79	0.38	1.24	0.21	1.24	6.67	4.82	5.85	0	0	0	0	0	0	0	0
Stdev	2.00	2.15	2.34	0.27	1.59	0	0.48	4.98	3.10	2.94	0.34	0.01	0.01	0	0	1.90	0.08	0.07
Prev(%)	95.83	96.72	91.67	76.47	76.60	100.00	100.00	87.50	100.00	98.59	2.25	4.17	6.25	0	0	7.14	1.51	1.09

[Species:Leptotrichia buccalis]	[Species:Leptotrichia hofstadii]	[Species:Leptotrichia hongkongensis]	[Species:Leptotrichia shahii]	[Species:Leptotrichia sp. HMT-218]
[Species:Leptotrichia sp. HMT-221]	[Species:Leptotrichia sp. HMT-223]	[Species:Leptotrichia sp. HMT-225]	[Species:Leptotrichia sp. HMT-417]	[Species:Leptotrichia sp. HMT-463]
[Species:Leptotrichia sp. HMT-498]	[Species:Leptotrichia sp. HMT-847]	[Species:Leptotrichia sp. HMT-879]	[Species:Leptotrichia sp. HMT-909]	[Species:Leptotrichia wadei]

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