HOMD ::Species:Leptotrichia shahii

Species: Leptotrichia shahii (HMT-0214) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia shahii

LINKS: Ecology Home | HMT-0214: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia shahii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia shahii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.06	0.08	0.01	0.01	0	0.02	0.12	0.06	0.05	0	0	0	0	0	0.02	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0
90^thp	0.06	0.11	0.18	0.02	0.03	0	0.04	0.35	0.10	0.14	0	0	0	0	0	0.04	0	0
Stdev	0.06	0.18	0.14	0.01	0.04	0	0.02	0.23	0.09	0.10	0.01	0	0	0	0	0.05	0.01	0
Prev(%)	4.17	19.75	16.67	0	0.93	0	0	14.29	4.55	12.77	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.14	0.24	0.03	0.03	0.02	0.01	0.01	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.30	0.51	0.01	0.06	0	0.04	0.02	0.02	0.02	0
Stdev	0.48	0.70	0.27	0.08	0.16	0.04	0.02	0.02	0.01	0
Prev(%)	30.41	39.19	10.13	21.62	8.78	20.27	11.49	13.51	12.84	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.02	0.03	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.12	0.30	0	0	0	0	0	0	0	0	0	0.05	0	0	0	0	0
Prev(%)	0	7.29	4.20	0	0	0	0	0	0	0	0	0	2.87	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.04	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.02	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.11	0.23	0.19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	14.07	20.00	5.43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0	0.01	0.02	0	0	0.05	0.13	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0.01	0	0	0	0	0	0	0	0
Stdev	0.08	0.02	0.05	0.13	0.01	0	0.28	0.74	0.17	0
Prev(%)	17.57	23.53	9.30	8.57	14.29	8.00	12.12	12.90	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.03	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.04	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.19	0.05	0.01	0.03	0	0	0	0	0.07	0	0	0	0	0	0	0	0
Prev(%)	0	9.60	16.67	11.77	1.06	0	0	0	0	2.58	0	0	0	0	0	0	0	0

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