HOMD ::Family:Leptotrichiaceae

Family: Leptotrichiaceae

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae
Lower rank member(s): [Genus:Leptotrichia] [Genus:Pseudoleptotrichia] [Genus:Sneathia]

LINKS: Ecology Home | Life Page: Leptotrichiaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Leptotrichiaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.00	2.09	2.10	0.23	0.66	0.19	0.81	4.72	2.75	2.21	2.97	0.06	0.02	0.10	0.01	0.87	1.54	0.02
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.26	0.18	0.26	0.03	0.08	0.19	0.29	0.46	0.31	0.22	0.01	0	0	0.10	0	0	0	0
90^thp	3.92	4.71	3.83	0.49	1.38	0.19	1.53	11.08	4.92	5.77	12.01	0.11	0.04	0.10	0.03	2.10	6.00	0.01
Stdev	2.42	2.19	2.92	0.28	1.35	0	0.64	7.10	2.84	2.79	5.98	0.18	0.03	0	0.01	2.39	3.35	0.13
Prev(%)	83.33	92.15	75.00	60.00	39.32	100.00	50.00	100.00	77.27	96.69	3.08	0	0	0	0	12.50	12.77	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.90	3.93	0.33	0.74	0.94	0.95	3.67	3.26	2.42	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.09	0.14	0	0.07	0.07	0.07	0.28	0.24	0.15	0
90^thp	7.71	10.05	0.38	1.44	2.09	2.21	9.72	8.28	6.33	0
Stdev	3.12	4.28	1.21	1.30	1.04	1.01	4.58	4.00	3.35	0.01
Prev(%)	97.40	97.40	64.94	98.70	97.40	93.51	97.40	98.70	96.10	2.60

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.30	5.10	0.31	1.03	1.58	1.46	5.33	4.71	3.39	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.51	0.26	0	0.09	0.12	0.33	0.46	0.29	0.20	0
90^thp	7.66	10.54	0.56	2.28	3.79	3.19	16.13	12.38	11.59	0
Stdev	3.40	4.78	0.90	1.26	2.50	1.43	6.55	5.54	4.95	0
Prev(%)	97.30	99.32	69.59	95.95	97.97	100.00	98.65	97.97	97.30	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.98	3.91	0.61	1.10	1.57	1.18	4.97	4.51	3.84	0.04	0.09	0.05	0.26	0.26	0.32	0.28	0.37	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.24	0.19	0	0.09	0.10	0.04	0.35	0.31	0.08	0	0	0	0	0	0	0	0	0
90^thp	7.09	9.62	1.60	2.45	3.59	2.90	13.18	11.39	10.51	0.12	0.11	0.07	0.70	0.84	0	0	0	0
Stdev	3.28	4.13	1.74	1.74	2.21	1.30	5.68	4.85	5.08	0.11	0.53	0.27	0.84	0.73	2.33	2.12	2.76	0
Prev(%)	97.35	97.35	82.52	94.52	95.97	92.31	98.51	100.00	100.00	37.00	29.89	21.81	39.66	37.79	7.04	8.11	7.89	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.97	5.15	0.92	2.08	2.82	2.07	7.61	6.69	5.28	0	0.17	0.17	0.70	0.42	0.72	0.67	0.80	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.38	0.35	0	0.20	0.27	0.48	0.63	0.66	0.27	0	0	0	0	0	0	0	0	0
90^thp	9.24	11.54	2.35	5.07	6.69	4.17	19.71	16.18	13.94	0	0.15	0.11	1.43	0.82	0	0	0	0
Stdev	3.75	5.02	2.03	2.60	3.28	1.94	8.00	6.53	6.44	0	0.81	1.87	2.44	1.66	4.30	4.00	4.75	0.18
Prev(%)	98.27	98.78	80.49	97.77	97.44	99.41	97.51	99.76	98.78	0	29.30	22.22	45.52	40.67	9.77	7.10	6.81	4.62

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	5.10	9.59	1.62	1.80	2.13	1.70	5.22	4.16	5.13	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.06	1.08	0.02	0.06	0.15	0.05	0.52	0.39	0.05	0
90^thp	16.06	23.62	5.37	4.96	4.81	4.12	12.81	8.18	18.40	0.02
Stdev	8.35	9.70	2.81	2.15	4.15	2.30	5.65	5.45	8.55	0.03
Prev(%)	100.00	100.00	97.67	100.00	100.00	98.00	100.00	100.00	100.00	25.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.73	1.97	1.34	0.18	0.56	0.21	0.53	3.30	2.71	2.27	0.04	0.02	0	0	0	0.51	0.36	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.12	0.07	0	0	0.21	0.12	0.14	0.22	0.18	0	0	0	0	0	0	0	0
90^thp	3.78	4.51	2.79	0.51	1.25	0.21	1.24	6.67	4.85	5.85	0	0	0	0	0	0	0	0
Stdev	2.20	2.15	2.33	0.31	1.59	0	0.48	4.98	3.10	2.94	0.34	0.08	0.01	0	0	1.90	2.23	0.07
Prev(%)	95.83	96.97	91.67	76.47	76.60	100.00	100.00	87.50	100.00	98.59	2.25	8.33	6.25	0	0	7.14	8.08	1.09

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