HOMD ::Species:Limosilactobacillus vaginalis

Species: Limosilactobacillus vaginalis (HMT-0051) Primary Body Site: Vaginal

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus vaginalis

LINKS: Ecology Home | HMT-0051: [Body Sites Data] [Taxon Description] | Life Page: Limosilactobacillus vaginalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Limosilactobacillus vaginalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.28	0	0	0	0	0	0	0	0.02	0	0	0	0.06	0.08	0.22	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.15	0.27	0.66	0
Stdev	0	0.01	1.29	0	0	0	0	0	0	0.01	0.13	0	0	0	0.09	0.15	0.37	0
Prev(%)	0	0	8.33	0	0	0	0	0	0	0.24	0	0	0	0	0	0	19.15	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.44	0.44	0.45	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.35	1.50	1.48	0
Stdev	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.77	0.61	0.76	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56.34	55.41	57.90	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-051 and HMT-938 were assigned to each taxon in proportion to the abundance of HMT-051 and HMT-938 individually at this body site (PFO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.05	0.07	0.07	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	0.15	0.08	0
Stdev	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.16	0.32	0.34	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22.99	21.31	20.42	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0.03	0	0	0	0	0.01	0.01	0	0	0
Prev(%)	9.46	5.88	2.33	5.71	7.14	4.00	6.06	3.23	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.23	0	0	0	0	0	0	0	0	0	0	0	0	0	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	1.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	0
Prev(%)	0	0.25	8.33	0	0	0	0	0	0	0	0	0	0	0	0	0	3.03	0

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