HOMD ::Phylum:Patescibacteria

Phylum: Patescibacteria

Full Lineage: Bacteria; Patescibacteria
Lower rank member(s): [Class:Patescibacteria [C1]] [Class:Saccharimonadia]
Genera:

LINKS: Ecology Home | Life Page: Patescibacteria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Phylum: Patescibacteria

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	5.39	4.69	12.12	1.43	0.90	1.06	13.39	7.55	4.90	4.84	0.47	0.04	0.10	0.70	0	0.15	0.09	0.04
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.67	0.32	1.15	0.02	0.10	1.06	4.49	3.87	0.52	0.40	0.01	0.01	0	0.70	0	0	0	0
90^thp	13.80	11.65	22.78	5.06	2.13	1.06	21.02	12.10	13.08	10.95	1.44	0.09	0.03	0.70	0	0.39	0.24	0.06
Stdev	5.64	4.82	10.86	2.18	1.35	0	9.68	3.79	5.02	4.46	0.96	0.05	0.48	0	0	0.38	0.29	0.15
Prev(%)	91.67	94.43	95.83	53.33	53.25	100.00	100.00	100.00	90.91	97.87	4.62	0	3.33	0	0	12.50	2.13	5.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.05	2.44	0.28	0.40	0.79	12.18	2.37	1.90	2.15	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.02	0	0	0.04	1.36	0.14	0.07	0.06	0
90^thp	6.79	6.68	1.12	0.84	1.79	30.69	6.02	5.07	5.77	0.03
Stdev	4.66	3.31	0.71	0.72	0.79	12.87	2.51	2.70	2.58	0.03
Prev(%)	92.21	89.61	51.95	83.12	94.81	98.70	94.81	97.40	92.21	14.29

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.91	2.23	0.54	0.50	0.85	10.81	1.76	2.05	1.95	0.02	0.05	0.03	0.14	0.07	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.18	0.04	0	0.01	0.01	1.07	0.09	0.19	0.05	0	0	0	0	0	0	0	0	0
90^thp	6.72	5.76	1.16	1.09	2.03	25.56	4.15	6.17	4.57	0.04	0.03	0.01	0.17	0.11	0	0	0	0
Stdev	3.91	2.58	1.68	1.03	1.00	11.42	1.92	2.64	3.00	0.11	0.31	0.22	0.68	0.24	0	0	0	0
Prev(%)	98.01	93.38	70.63	89.73	90.60	98.46	95.24	98.67	96.77	20.00	21.55	11.33	24.14	21.66	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.14	0.20	0	0	0.02	0.46	0.04	0.02	0.03	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.42	0.53	0	0	0.05	1.16	0.10	0.07	0.07	0	0	0	0	0	0	0	0	0
Stdev	0.29	0.44	0	0	0.04	0.83	0.08	0.06	0.06	0	0	0	0	0	0	0	0	0
Prev(%)	63.21	64.63	0	0	25.32	84.23	42.99	36.01	40.88	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.89	3.13	0.53	0.45	0.31	1.10	1.17	1.41	0.57	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.04	0	0.01	0.02	0.04	0.09	0.07	0.01	0
90^thp	15.54	6.78	2.36	0.93	0.66	1.74	3.42	3.00	1.34	0
Stdev	7.02	5.91	1.04	0.93	0.47	2.46	1.39	2.10	0.78	0.01
Prev(%)	97.30	100.00	93.02	100.00	96.43	100.00	100.00	100.00	95.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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