HOMD ::Class:Patescibacteria [C1]

Class: Patescibacteria [C1]

Full Lineage: Bacteria; Patescibacteria; Patescibacteria [C1]
Lower rank member(s): [Order:Absconditabacterales] [Order:Patescibacteria [C1 O1]]
Genera:

LINKS: Ecology Home | Life Page: Patescibacteria [C1]

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Class: Patescibacteria [C1]

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.76	0.66	0.13	0.26	0.12	0.01	1.06	0.79	0.61	0.29	0.01	0	0.01	0.06	0	0.07	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.01	0.09	0.02	0	0	0	0	0	0.06	0	0	0	0
90^thp	1.42	1.84	0.34	0.08	0.30	0.01	2.30	2.08	1.59	0.86	0.03	0.01	0	0.06	0	0.18	0.01	0
Stdev	1.28	1.01	0.30	0.94	0.35	0	0.96	1.76	1.16	0.72	0.03	0.01	0.02	0	0	0.21	0.03	0
Prev(%)	66.67	69.11	25.00	13.33	14.24	0	62.50	71.43	40.91	43.03	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.15	0.17	0	0.01	0.01	0.05	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.56	0.47	0	0.02	0.02	0.15	0.01	0	0	0
Stdev	0.39	0.38	0	0.02	0.03	0.13	0.02	0.01	0.01	0
Prev(%)	37.66	41.56	2.60	15.58	15.58	40.26	10.39	6.49	3.90	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.24	0.28	0	0.04	0.16	1.33	0.28	0.39	0.27	0	0.01	0	0.01	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.84	1.01	0	0.12	0.57	3.58	0.76	0.80	0.45	0	0	0	0	0.02	0	0	0	0
Stdev	0.39	0.50	0	0.10	0.48	2.74	0.71	1.10	1.31	0.03	0.11	0.02	0.09	0.15	0	0	0	0
Prev(%)	70.86	65.56	0	50.69	44.97	76.92	50.59	57.33	41.94	3.33	1.44	0.57	1.15	11.52	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.11	0.17	0	0	0	0.13	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.37	0.51	0	0	0	0.38	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.28	0.42	0	0	0	0.30	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	44.94	46.34	0	0	0	52.98	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.32	0.15	0.07	0.03	0.05	0.33	0.36	0.60	0.11	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.19	0.38	0.30	0.10	0.16	0.74	1.10	2.62	0.13	0
Stdev	2.01	0.29	0.16	0.06	0.11	1.06	0.84	1.40	0.38	0
Prev(%)	55.41	61.77	58.14	54.29	57.14	72.00	69.70	64.52	55.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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