HOMD ::Species:Peptidiphaga gingivicola

Species: Peptidiphaga gingivicola (HMT-0848) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Peptidiphaga; Peptidiphaga gingivicola

LINKS: Ecology Home | HMT-0848: [Body Sites Data] [Taxon Description] | Life Page: Peptidiphaga gingivicola

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Peptidiphaga gingivicola

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0.11	0.94	0	0.01	0	0.01	0	0	0	0	0	0.06	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.12	0.26	1.05	0	0.02	0	0.01	0	0	0	0.01	0.01	0	0	0	0.01	0	0
Stdev	0.26	0.32	2.63	0.01	0.07	0	0.01	0	0	0.01	0	0	0.33	0	0	0.01	0	0
Prev(%)	12.50	29.87	33.33	0	1.24	0	0	0	0	0.47	0	0	3.33	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.06	0.07	0	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.14	0.19	0	0	0	0	0	0	0	0
Stdev	0.20	0.17	0.01	0.04	0.02	0.03	0	0.01	0.01	0
Prev(%)	25.00	33.11	1.35	8.11	3.38	6.08	0.68	4.05	1.35	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.09	0.12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.16	0.32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	23.18	28.48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.08	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.27	0.32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	25.43	28.54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.17	0.60	0.01	0.01	0.05	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.30	0.47	0.01	0.01	0.01	0.01	0	0	0	0
Stdev	0.54	2.30	0.02	0.02	0.24	0	0	0	0	0
Prev(%)	44.59	58.82	27.91	40.00	25.00	28.00	12.12	3.23	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0.87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.08	2.81	0	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	8.84	33.33	0	1.86	0	0	0	0	0.23	0	0	0	0	0	0	0.51	0

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