HOMD ::Family:Porphyromonadaceae

Family: Porphyromonadaceae

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae
Lower rank member(s): [Genus:Porphyromonas]

LINKS: Ecology Home | Life Page: Porphyromonadaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Porphyromonadaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.15	1.91	4.95	0.69	1.36	3.96	5.55	3.09	4.00	2.59	5.80	0.06	0.02	0.79	0.50	0.40	2.02	0.06
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.18	0.07	0.15	0.09	0.15	3.96	1.20	0.10	0.31	0.05	0.02	0.01	0	0.79	0.01	0.02	0.01	0.01
90^thp	4.58	4.89	14.93	1.69	3.33	3.96	9.24	7.21	9.41	8.11	24.60	0.13	0.03	0.79	1.35	0.95	8.72	0.10
Stdev	1.65	2.09	6.72	0.64	1.59	0	3.65	3.10	3.83	3.69	11.80	0.09	0.06	0	0.93	1.00	4.28	0.11
Prev(%)	91.67	90.13	83.33	80.00	80.80	100.00	100.00	85.71	86.36	91.96	4.62	0	3.33	0	25.00	12.50	7.45	4.00

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.83	2.13	3.89	2.98	3.29	4.87	2.64	3.59	3.94	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0	0	0.12	0.10	0.09	0.02	0.24	0.02	0
90^thp	8.04	5.00	13.50	7.83	8.14	11.77	7.49	8.17	11.63	0.01
Stdev	3.86	3.02	5.70	3.68	3.39	5.07	3.22	3.67	5.97	0.01
Prev(%)	94.81	85.71	84.42	98.70	93.51	93.51	92.21	96.10	92.21	11.69

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.68	3.87	4.08	3.63	3.81	5.75	4.03	4.58	4.38	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.21	0.11	0.01	0.34	0.24	0.88	0.12	0.36	0.04	0
90^thp	10.69	9.36	11.58	8.17	8.23	11.88	10.34	10.27	12.26	0
Stdev	4.90	3.53	6.19	4.32	3.59	4.64	4.83	4.88	5.56	0.01
Prev(%)	98.65	94.59	89.86	99.32	98.65	100.00	95.95	98.65	95.95	5.59

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.47	2.23	2.72	2.44	2.88	3.95	2.95	3.62	2.96	0.09	0.12	0.04	0.16	0.29	0.03	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0.03	0	0.09	0.08	0.25	0.06	0.25	0.01	0	0	0	0	0	0	0	0	0
90^thp	6.39	5.87	8.38	5.50	7.62	8.62	8.44	9.75	9.55	0.19	0.12	0.04	0.34	0.60	0.03	0	0	0
Stdev	3.04	2.88	4.16	3.42	3.35	4.30	3.74	3.91	4.38	0.33	0.70	0.42	0.46	0.96	0.10	0	0	0
Prev(%)	95.36	94.70	89.51	96.58	95.97	95.39	94.64	98.00	90.32	38.67	35.06	22.95	37.36	41.01	19.72	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.22	1.97	5.67	4.87	5.32	5.81	4.07	5.72	4.28	0.11	0.46	0.30	1.01	0.87	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0	0	0.24	0.17	0.66	0.13	0.40	0.03	0	0	0	0	0	0	0	0	0
90^thp	5.51	5.81	16.65	11.71	12.11	12.65	11.36	13.89	12.63	0.20	0.39	0.26	1.16	1.59	0	0	0	0
Stdev	3.18	2.83	8.45	5.30	5.27	5.17	4.78	5.83	5.63	0.43	1.94	1.31	3.85	2.56	0	0	0	0
Prev(%)	91.61	88.78	87.90	96.03	94.89	98.51	94.08	96.84	92.94	42.53	38.53	29.63	46.21	50.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.62	2.09	1.30	1.59	3.44	6.21	1.90	3.21	1.95	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.02	0	0.01	0.08	0.14	0.04	0.08	0.02	0
90^thp	7.06	6.63	3.83	3.82	7.76	19.40	4.37	7.40	6.14	0.07
Stdev	4.93	2.95	2.20	2.21	6.80	8.29	3.04	5.16	2.83	0.03
Prev(%)	94.59	97.06	100.00	100.00	96.43	98.00	100.00	100.00	100.00	25.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.46	2.45	4.76	0.71	1.96	5.92	6.58	2.59	4.19	2.90	0.16	0.01	0.02	3.93	0.15	0.20	0.20	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.28	0.09	0.03	0	0.05	5.92	0.97	0	0.12	0.03	0	0	0	3.93	0	0	0	0
90^thp	5.06	5.89	13.90	2.40	5.38	5.92	11.38	7.18	9.91	8.94	0.04	0.01	0.01	3.93	0	0	0	0
Stdev	1.98	2.48	6.84	1.12	2.54	0	4.63	3.12	4.49	4.14	0.73	0.01	0.06	0	0.51	0.76	1.44	0.07
Prev(%)	95.83	94.95	91.67	70.59	93.08	100.00	100.00	81.25	96.00	93.43	11.71	12.50	12.50	100.00	9.09	7.14	10.10	7.46

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