HOMD ::Species:Porphyromonas endodontalis

Species: Porphyromonas endodontalis (HMT-0273) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas endodontalis

LINKS: Ecology Home | HMT-0273: [Body Sites Data] [Taxon Description] | Life Page: Porphyromonas endodontalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Porphyromonas endodontalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.41	0.13	1.12	0.02	0.03	0	0.42	0.02	0.51	0.02	0	0	0	0.03	0	0	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0	0.05	0	0	0	0.06	0.01	0.01	0	0	0	0	0.03	0	0	0	0
90^thp	1.16	0.28	2.83	0.07	0.07	0	0.82	0.04	0.65	0.03	0.01	0	0	0.03	0.01	0	0	0.01
Stdev	0.84	0.54	1.27	0.05	0.08	0	0.43	0.02	1.64	0.07	0.01	0	0	0	0	0	0.01	0.01
Prev(%)	37.50	28.10	83.33	6.67	5.57	0	50.00	14.29	36.36	13.00	1.54	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.33	0.04	0	0.01	0.01	0.09	0.04	0.33	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.58	0.03	0	0.01	0.03	0.19	0.10	0.41	0	0
Stdev	1.21	0.22	0	0.02	0.02	0.27	0.14	1.13	0.01	0
Prev(%)	29.87	16.88	0	12.99	12.99	32.47	16.88	36.36	10.39	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.30	0.25	0.01	0.06	0.04	0.28	0.28	0.73	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	3.52	0.52	0	0.18	0.10	0.84	0.42	1.34	0.05	0
Stdev	3.51	1.15	0.04	0.14	0.10	0.50	2.08	3.06	0.05	0
Prev(%)	58.78	39.87	6.76	44.59	34.46	66.89	53.38	59.46	23.65	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.59	0.06	0	0	0.02	0.14	0.17	0.59	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.91	0.07	0	0	0.03	0.49	0.34	1.49	0	0	0	0	0	0	0	0	0	0
Stdev	2.10	0.23	0	0	0.07	0.30	0.59	1.57	0	0	0.03	0	0	0	0	0	0	0
Prev(%)	49.67	28.48	0	0	23.49	50.77	39.29	59.33	0	0	2.01	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.77	0.14	0	0	0	0.29	0.29	1.05	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	2.29	0.26	0	0	0	0.85	0.56	2.48	0	0	0	0	0	0	0	0	0	0
Stdev	2.14	0.71	0	0	0	0.60	0.92	3.00	0	0	0	0	0	0	0	0	0	0
Prev(%)	53.33	32.20	0	0	0	59.52	46.11	62.04	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.75	0.11	0.02	0.21	0.05	0.07	0.15	1.11	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.94	0.15	0.03	0.53	0.14	0.20	0.58	1.91	0.01	0
Stdev	3.14	0.36	0.07	0.58	0.10	0.13	0.29	3.75	0.01	0
Prev(%)	51.35	44.12	44.19	57.14	53.57	62.00	66.67	67.74	30.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.37	0.11	0.97	0.02	0.04	0	0.41	0.75	0.53	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0.02	0	0	0	0.02	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.11	0.28	2.59	0.04	0.06	0	0.87	1.33	0.74	0.01	0	0	0	0	0	0	0	0
Stdev	0.81	0.47	1.19	0.06	0.24	0	0.45	2.38	1.66	0.03	0	0	0	0	0	0	0	0
Prev(%)	50.00	32.32	91.67	11.77	16.49	0	100.00	25.00	44.00	11.97	0	0	0	0	0	0	0	0.18

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