HOMD ::Species:Prevotella nigrescens

Species: Prevotella nigrescens (HMT-0693) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella nigrescens

LINKS: Ecology Home | HMT-0693: [Body Sites Data] [Taxon Description] | Life Page: Prevotella nigrescens

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Prevotella nigrescens

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.69	0.22	1.09	0.04	0.05	0.01	0.37	0.09	0.69	0.04	0.01	0	0	0.03	0.01	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.08	0	0.02	0	0	0.01	0.24	0.03	0.02	0.01	0	0	0	0.03	0	0	0	0
90^thp	1.44	0.66	2.46	0.08	0.13	0.01	0.60	0.14	1.89	0.08	0.01	0.01	0	0.03	0.03	0	0.01	0.01
Stdev	0.95	0.55	1.50	0.06	0.11	0	0.22	0.05	1.37	0.05	0.01	0.01	0	0	0.02	0	0.01	0.01
Prev(%)	79.17	44.05	75.00	13.33	7.43	0	62.50	0	54.55	13.71	1.54	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.88	0.30	0.02	0.05	0.04	0.20	0.26	1.05	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	2.89	1.13	0.02	0.17	0.09	0.52	0.34	2.06	0.04	0
Stdev	1.93	0.68	0.11	0.10	0.06	0.40	1.53	3.33	0.04	0.01
Prev(%)	59.74	44.16	14.29	45.45	48.05	59.74	36.36	57.14	22.08	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.24	0.65	0.02	0.17	0.08	0.38	0.25	1.25	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	7.48	2.08	0.02	0.34	0.23	1.12	0.32	1.22	0.07	0
Stdev	4.52	1.22	0.14	0.38	0.17	0.55	1.46	4.06	0.12	0
Prev(%)	80.41	68.92	11.49	63.51	54.05	79.73	54.73	60.81	27.70	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.84	0.23	0.07	0.06	0.04	0.19	0.23	0.78	0.01	0	0	0.01	0.02	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	2.39	0.79	0.03	0.17	0.12	0.47	0.32	1.26	0.02	0	0	0	0	0	0	0	0	0
Stdev	1.54	0.58	0.42	0.11	0.07	0.41	1.46	2.53	0.03	0.04	0.02	0.05	0.13	0.15	0	0	0	0
Prev(%)	72.85	52.98	26.57	56.16	48.32	64.61	50.30	66.67	21.93	6.33	6.03	3.40	6.32	5.99	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.26	0.30	0.05	0.15	0.08	0.32	0.32	1.14	0.03	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.66	0.75	0.08	0.45	0.24	0.77	0.44	2.70	0.05	0	0	0	0	0	0	0	0	0
Stdev	2.28	0.74	0.25	0.34	0.18	0.52	1.82	3.17	0.12	0	0	0	0	0	0	0	0	0
Prev(%)	77.28	58.29	19.51	54.84	42.71	74.70	48.29	64.96	25.30	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.03	0.01	0	0.01	0	0	0.01	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0.02	0	0.02	0	0.01	0.04	0.04	0	0
Stdev	0.07	0.02	0	0.01	0	0.01	0.04	0.06	0	0
Prev(%)	50.00	35.29	18.61	51.43	28.57	20.00	39.39	48.39	2.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.81	0.28	1.28	0.04	0.07	0	0.44	0	1.48	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0	0	0	0	0	0.16	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.71	0.82	3.13	0.13	0.18	0	0.78	0.01	2.20	0.02	0	0	0	0	0	0	0	0
Stdev	1.20	0.74	1.86	0.08	0.20	0	0.39	0.01	4.29	0.05	0	0	0	0	0	0	0.05	0
Prev(%)	95.83	54.55	79.17	23.53	35.90	0	100.00	12.50	64.00	21.83	0.90	0	0	0	0	0	0.51	0

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