Species: Prevotella scopos (HMT-0885) Primary Body Site: Oral
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LINKS: Ecology Home
| HMT-0885: [Body Sites Data]
[Taxon Description]
| Life Page: Prevotella scopos
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.03 | 0.01 | 0.09 | 0.02 | 0.05 | 0.17 | 0.44 | 0.51 | 0.42 | 0.39 | 0.02 | 0 | 0 | 0.13 | 0.01 | 0 | 0.01 | 0.02 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.01 | 0 | 0.01 | 0 | 0 | 0.17 | 0.12 | 0.30 | 0.08 | 0.10 | 0 | 0 | 0 | 0.13 | 0 | 0 | 0 | 0 |
| 90thp | 0.07 | 0.04 | 0.18 | 0.04 | 0.13 | 0.17 | 0.86 | 0.75 | 0.96 | 0.73 | 0.03 | 0 | 0 | 0.13 | 0.04 | 0.01 | 0.04 | 0.04 |
| Stdev | 0.03 | 0.03 | 0.17 | 0.01 | 0.07 | 0 | 0.32 | 0.20 | 0.48 | 0.28 | 0.09 | 0 | 0 | 0 | 0.03 | 0 | 0.04 | 0.04 |
| Prev(%) | 4.17 | 1.27 | 4.17 | 0 | 4.64 | 100.00 | 50.00 | 100.00 | 45.45 | 82.03 | 3.08 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to P. melaninogenica, P. scopos, and P. sp. HMT 313 and 314 were assigned one-fourth to each taxon.
Reads equally close to P. melaninogenica, P. scopos, and P. sp. HMT 313 and 314 were assigned one-fourth to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.12 | 0.05 | 0.05 | 0.19 | 0.87 | 1.02 | 0.99 | 0.76 | 1.32 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.01 | 0.09 | 0.23 | 0.10 | 0.06 | 0.13 | 0 |
| 90thp | 0.29 | 0.16 | 0.13 | 0.45 | 2.05 | 2.19 | 2.06 | 1.77 | 2.83 | 0 |
| Stdev | 0.34 | 0.10 | 0.16 | 0.30 | 0.93 | 0.93 | 1.05 | 0.86 | 1.22 | 0 |
| Prev(%) | 63.51 | 61.49 | 54.73 | 93.24 | 97.30 | 99.32 | 96.62 | 97.30 | 98.65 | 0.70 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-469 and HMT-885 were assigned to each taxon in proportion to the abundance of HMT-469 and HMT-885 individually at this body site (TDO).
Reads equidistant to HMT-469 and HMT-885 were assigned to each taxon in proportion to the abundance of HMT-469 and HMT-885 individually at this body site (TDO).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0.05 | 0.07 | 0.03 | 0.02 | 0.03 | 0 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0.10 | 0.19 | 0.06 | 0.05 | 0.10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0.16 | 0.28 | 0.11 | 0.07 | 0.10 | 0 | 0 | 0 | 0 | 0.08 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 23.49 | 22.31 | 17.86 | 22.00 | 24.52 | 0 | 0 | 0 | 0 | 1.38 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0 | 0 | 0.01 | 0.02 | 0.03 | 0.02 | 0.02 | 0.01 | 0.03 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0.03 | 0.04 | 0.02 | 0.09 | 0.04 | 0.03 | 0.05 | 0 |
| Stdev | 0.01 | 0 | 0.03 | 0.07 | 0.15 | 0.04 | 0.06 | 0.02 | 0.09 | 0 |
| Prev(%) | 14.87 | 2.94 | 25.58 | 40.00 | 32.14 | 36.00 | 57.58 | 54.84 | 40.00 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0.01 | 0.14 | 0.04 | 0.05 | 0.02 | 0.06 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0.14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0.14 | 0.09 | 0.17 | 0.02 | 0.15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0.06 | 0 | 0.09 | 0.13 | 0.08 | 0.17 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 8.78 | 100.00 | 37.50 | 18.75 | 12.00 | 27.00 | 0.45 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
