HOMD ::Species:Pseudoleptotrichia goodfellowii

Species: Pseudoleptotrichia goodfellowii (HMT-0845) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia; Pseudoleptotrichia goodfellowii

LINKS: Ecology Home | HMT-0845: [Body Sites Data] [Taxon Description] | Life Page: Pseudoleptotrichia goodfellowii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Pseudoleptotrichia goodfellowii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.28	0.04	0.08	0.01	0.01	0	0.01	0	0.01	0	0	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.60	0.09	0.09	0.01	0.01	0	0.03	0	0.03	0.01	0	0	0	0	0	0	0	0
Stdev	0.63	0.08	0.25	0.04	0.01	0	0.01	0	0.02	0.01	0	0	0	0	0	0	0	0
Prev(%)	41.67	22.03	12.50	6.67	0.62	0	0	0	0	0.24	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.21	0.07	0.01	0.01	0.01	0.03	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.47	0.22	0	0.02	0.02	0.09	0	0.03	0	0
Stdev	0.42	0.17	0.11	0.03	0.03	0.07	0.01	0.04	0.01	0
Prev(%)	50.65	35.06	5.20	20.78	12.99	25.97	7.79	15.58	5.20	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.05	0.01	0.01	0	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.33	0.13	0	0.03	0	0.06	0	0	0	0
Stdev	0.33	0.15	0.04	0.02	0.01	0.04	0.01	0.02	0.01	0
Prev(%)	42.57	35.13	2.70	14.87	8.11	28.38	4.05	9.46	4.05	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.04	0.03	0.01	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.12	0.01	0.03	0	0.06	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.37	0.13	0.26	0.02	0	0.05	0.02	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	48.34	39.73	11.19	26.03	0	28.46	5.06	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.06	0.02	0.01	0	0.02	0	0.01	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.61	0.16	0	0.04	0	0.07	0	0.02	0	0	0	0	0	0	0	0	0	0
Stdev	0.46	0.20	0.19	0.02	0	0.05	0	0.06	0.01	0	0	0	0	0	0	0	0	0
Prev(%)	50.37	37.56	6.42	18.11	0	31.25	0	12.89	6.57	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.08	0.05	0.01	0.01	0.06	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.29	0.17	0.01	0.01	0.12	0.01	0	0	0	0
Stdev	0.18	0.09	0.04	0.02	0.18	0	0.01	0	0	0
Prev(%)	44.59	61.77	25.58	34.29	35.71	32.00	21.21	25.81	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.31	0.04	0.07	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.68	0.09	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.76	0.10	0.26	0.08	0.01	0	0	0	0.01	0	0	0	0	0	0	0	0	0
Prev(%)	50.00	31.31	12.50	5.88	2.13	0	0	0	8.00	0.47	0	0	0	0	0	0	0	0

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