HOMD ::Order:Pseudomonadales

Order: Pseudomonadales

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales
Lower rank member(s): [Family:Moraxellaceae] [Family:Pseudomonadaceae]
Genera:

LINKS: Ecology Home | Life Page: Pseudomonadales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Pseudomonadales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	0.04	0.01	0.01	0	0.01	0	0	0	2.05	0.06	0.05	2.25	0.03	0.02	0.02	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0.01	0.01	0	2.25	0	0	0	0
90^thp	0.01	0	0.05	0.01	0.01	0	0.02	0	0.01	0	3.88	0.17	0.09	2.25	0.04	0.04	0.03	0
Stdev	0.01	0.14	0.14	0.01	0.04	0	0.02	0	0	0.03	6.85	0.08	0.09	0	0.02	0.03	0.07	0
Prev(%)	0	0.25	8.33	0	0	0	0	0	0	0	21.54	0	13.33	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0	0	0	0.03	0.20	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0.22	1.56	0	0	0
Prev(%)	0	0	0	0	0	1.30	6.49	1.30	0	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0	0	0	0	0.76	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0.02	0	0	0	0	0	6.24	0	0	0
Prev(%)	0.68	0	0	0	0	0.68	4.73	1.35	0	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.03	0	0.04	0.47	0	0	1.16	0.04	0.04	0.57	0.34	0.28	0.16	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	1.01	0.05	0.06	1.24	0.74	0.84	0.56	0.15	0
Stdev	0	0	0	0.39	0	0.34	3.76	0	0	5.66	0.26	0.20	1.85	0.89	0.68	0.41	0.17	0
Prev(%)	0	0	0	4.79	0	1.54	9.52	0	0	43.33	28.16	31.45	75.29	64.52	40.84	37.84	26.32	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.03	0.04	0	0.05	0.07	1.19	0	0.01	4.14	0.60	0.41	1.41	2.26	0	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.06	0.01	0.23	0	0	8.63	0.64	0.48	3.00	3.99	0	0	0	0
Stdev	0.34	0.40	0.37	0	0.27	0.58	7.73	0	0.07	13.56	4.24	2.12	3.71	7.36	0	0	0	0.11
Prev(%)	2.47	2.19	8.39	0	16.37	10.42	24.61	0	0.73	68.20	52.87	53.09	77.93	76.67	0	0	0	0.49

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.10	0	0.26
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.01	0	0	0	0	0.24
Stdev	0	0	0	0	0.01	0	0	0.53	0	0.79
Prev(%)	8.11	0	11.63	25.71	17.86	14.00	15.15	16.13	0	25.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.04	0.03	0	0.12	0	0.02	0	0	0.01	6.41	0.01	0.02	2.46	0.36	0.16	0.06	0.06
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	2.46	0	0	0	0
90^thp	0	0	0.03	0	0	0	0.04	0	0	0	17.39	0.03	0.08	2.46	0.63	0.34	0.03	0
Stdev	0	0.82	0.13	0	2.33	0	0.05	0	0	0.14	18.02	0.04	0.06	0	0.90	0.45	0.38	0.92
Prev(%)	0	1.01	16.67	0	1.86	0	12.50	0	0	0.23	27.93	29.17	21.88	100.00	36.36	21.43	11.62	2.00

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