HOMD ::Genus:Pseudomonas

Genus: Pseudomonas

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Lower rank member(s): [Species:Pseudomonas aeruginosa] [Species:Pseudomonas fluorescens] [Species:Pseudomonas luteola] [Species:Pseudomonas oleovorans] [Species:Pseudomonas otitidis] [Species:Pseudomonas sp. HMT-032]

LINKS: Ecology Home | Life Page: Pseudomonas

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Pseudomonas

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0	0	0	0	0	0	0	0	0.01	0.01	0.01	0.98	0.02	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.98	0	0	0	0
90^thp	0	0	0	0	0	0	0.01	0	0	0	0.04	0.02	0.01	0.98	0.04	0.04	0.02	0
Stdev	0	0.13	0	0	0	0	0.01	0	0	0.02	0.02	0.01	0	0	0.02	0.03	0.06	0
Prev(%)	0	0.25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0.01	0.01	0.02	0.27	0.10	0.28	0.16	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.02	0.01	0.03	0.39	0.26	0.84	0.56	0.15	0
Stdev	0	0	0	0.01	0	0	0	0	0	0.09	0.13	0.10	1.62	0.25	0.68	0.41	0.17	0
Prev(%)	0	0	0	4.11	0	0	0	0	0	19.00	14.37	18.41	45.98	43.78	40.84	37.84	26.32	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0.13	0.07	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0	0	0	0.80	0.55	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	8.97	4.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.01	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0.37	0	0
Prev(%)	6.76	0	9.30	14.29	17.86	14.00	6.06	12.90	0	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.04	0	0	0	0	0.02	0	0	0.01	0	0	0	1.47	0.36	0.16	0.06	0.06
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.47	0	0	0	0
90^thp	0	0	0	0	0	0	0.04	0	0	0	0	0.02	0	1.47	0.63	0.34	0.02	0
Stdev	0	0.82	0	0	0	0	0.05	0	0	0.14	0.06	0.01	0.01	0	0.90	0.45	0.38	0.92
Prev(%)	0	0.76	0	0	0.27	0	12.50	0	0	0.23	1.35	16.67	6.25	100.00	36.36	21.43	10.61	1.46

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