HOMD ::Species:Rothia aeria

Species: Rothia aeria (HMT-0188) Primary Body Site: Oral

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Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia aeria

LINKS: Ecology Home | HMT-0188: [Body Sites Data] [Taxon Description] | Life Page: Rothia aeria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Rothia aeria

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.67	2.50	0.32	0.15	0.28	0.03	0.26	0.01	0.01	0.02	0.04	0.02	0.05	0.83	0	0.09	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.28	0.32	0.01	0	0.04	0.03	0.03	0	0	0	0	0	0	0.83	0	0	0	0
90^thp	4.01	5.84	1.10	0.30	0.69	0.03	0.46	0.02	0.02	0.04	0.12	0.07	0.01	0.83	0.01	0.23	0.01	0
Stdev	1.83	2.89	0.68	0.38	0.34	0	0.20	0.01	0.02	0.03	0.06	0.03	0.23	0	0.01	0.24	0.08	0.01
Prev(%)	91.67	95.70	37.50	33.33	45.51	100.00	50.00	0	0	13.71	0	4.35	6.67	0	0	12.50	1.06	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to R. aeria and R. dentocariosa were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.67	4.89	0.13	0.79	0.19	0.41	0.14	0.06	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.30	0.56	0	0.05	0.01	0	0	0	0	0
90^thp	8.17	11.72	0.28	1.79	0.53	1.09	0.13	0.13	0.05	0
Stdev	4.10	4.67	0.36	1.97	0.37	0.62	0.83	0.17	0.03	0
Prev(%)	96.10	97.40	63.64	97.40	93.51	88.31	59.74	59.74	49.35	5.20

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.35	1.95	0.02	0.17	0.12	0.25	0.02	0.06	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.17	0	0	0	0	0	0	0	0
90^thp	3.21	4.55	0.04	0.44	0.23	0.71	0.07	0.10	0.05	0
Stdev	2.47	3.27	0.07	0.25	0.51	0.47	0.04	0.24	0.04	0
Prev(%)	92.57	95.27	25.68	79.05	62.16	74.32	39.87	41.89	28.38	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.18	2.71	0.05	0.28	0.08	0.20	0.07	0.04	0.01	0.02	0.04	0.02	0.08	0.08	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	5.81	7.23	0.10	0.73	0.23	0.54	0.07	0.06	0.03	0.05	0.03	0.02	0.12	0.13	0	0	0	0
Stdev	2.93	3.22	0.15	0.43	0.15	0.43	0.53	0.22	0.03	0.10	0.22	0.19	0.42	0.32	0	0	0	0
Prev(%)	89.40	94.70	51.05	82.19	58.39	56.92	34.82	37.33	31.61	24.67	18.10	13.88	19.54	15.67	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.64	2.50	0.12	0.39	0.14	0.29	0.10	0.05	0.02	0.05	0.09	0.07	0.15	0.22	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	4.01	6.19	0.25	1.11	0.41	0.85	0.10	0.09	0.05	0.11	0.05	0.07	0.45	0.26	0	0	0	0
Stdev	2.70	3.25	0.42	0.63	0.35	0.61	0.69	0.23	0.09	0.20	0.61	0.36	0.57	1.12	0	0	0	0
Prev(%)	93.83	96.34	38.77	77.92	53.45	70.83	33.96	35.52	22.87	29.50	17.83	21.30	26.21	30.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 188 and 587 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.24	2.01	0.19	1.05	0.25	0.17	0.04	0.03	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.10	0	0.08	0.02	0.01	0	0	0	0
90^thp	7.19	2.96	0.16	3.26	0.71	0.36	0.09	0.14	0.03	0.01
Stdev	3.59	5.23	0.60	1.68	0.25	0.28	0.05	0.06	0.07	0.01
Prev(%)	100.00	100.00	95.35	100.00	96.43	100.00	96.97	80.64	72.50	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.75	2.65	0.35	0.15	0.33	0.02	0.25	0	0	0.01	0.02	0.02	0.04	0.86	0	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.24	0.11	0	0	0	0.02	0.02	0	0	0	0	0	0	0.86	0	0	0	0
90^thp	4.50	6.65	1.20	0.22	0.88	0.02	0.47	0	0	0.03	0	0.04	0.01	0.86	0	0	0	0
Stdev	2.40	3.56	0.87	0.48	0.66	0	0.21	0	0	0.03	0.10	0.05	0.24	0	0	0.10	0.06	0
Prev(%)	91.67	95.96	45.83	41.18	69.15	100.00	87.50	0	0	18.07	7.66	33.33	12.50	100.00	0	7.14	1.51	0.36

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