HOMD ::Genus:Schaalia

Genus: Schaalia

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia
Lower rank member(s): show[+]

[Species:Schaalia cardiffensis] [Species:Schaalia dentiphila] [Species:Schaalia georgiae] [Species:Schaalia hongkongensis] [Species:Schaalia lingnae]
[Species:Schaalia meyeri] [Species:Schaalia odontolytica] [Species:Schaalia sp. HMT-172] [Species:Schaalia sp. HMT-180] [Species:Schaalia sp. HMT-240]
[Species:Schaalia sp. HMT-404]

LINKS: Ecology Home | Life Page: Schaalia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Schaalia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.55	0.45	1.00	0.34	0.81	0.39	2.20	4.04	4.49	9.99	0.32	0.04	0.05	1.56	0	0.09	0.10	0.07
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.15	0.09	0.28	0.04	0.05	0.39	0.47	1.18	1.14	2.67	0.01	0	0	1.56	0	0	0	0.01
90^thp	1.08	0.93	1.76	0.54	2.00	0.39	5.43	7.18	13.04	19.87	0.44	0.09	0.05	1.56	0.01	0.24	0.05	0.10
Stdev	0.37	0.56	1.04	0.37	1.12	0	2.69	3.07	5.49	7.52	1.00	0.04	0.16	0	0	0.20	0.73	0.38
Prev(%)	91.67	87.09	75.00	60.00	51.70	100.00	75.00	100.00	95.45	99.53	3.08	4.35	3.33	0	0	12.50	1.06	1.60

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.36	0.18	0.18	0.68	2.93	2.05	5.08	4.08	7.65	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.02	0.45	0.45	0.72	0.37	1.31	0
90^thp	0.67	0.53	0.59	1.64	5.99	4.75	10.85	9.28	16.72	0.01
Stdev	0.90	0.32	0.39	1.06	2.75	2.17	4.50	3.79	6.22	0.02
Prev(%)	77.92	74.03	62.34	93.51	98.70	96.10	100.00	98.70	100.00	14.29

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.23	0.11	0.13	0.52	2.14	1.35	2.75	2.31	4.07	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.48	0.27	0.51	0.26	0.66	0
90^thp	0.42	0.28	0.42	1.45	4.99	3.21	5.92	5.19	10.25	0
Stdev	0.87	0.22	0.36	0.70	1.82	1.50	2.41	2.47	3.69	0.01
Prev(%)	70.95	69.59	39.87	89.19	99.32	100.00	97.97	97.97	99.32	5.59

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.16	0.23	0.74	3.17	2.03	4.65	4.18	7.70	0.07	0	0	0	0.05	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.02	0.49	0.28	0.89	0.36	1.69	0	0	0	0	0	0	0	0	0
90^thp	0.63	0.40	0.65	2.06	6.54	4.61	9.96	8.96	13.73	0.16	0	0	0	0.04	0	0	0	0
Stdev	0.81	0.21	0.48	1.06	2.69	2.16	3.97	3.55	5.23	0.20	0	0	0	0.23	0	0	0	0
Prev(%)	84.11	88.08	79.72	92.47	97.31	96.92	98.81	95.33	98.71	44.33	0	0	0	16.59	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.22	0.35	1.20	5.28	2.21	5.79	4.00	7.79	0.13	0.24	0.20	0.67	0.67	0	0	0	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.01	0	0.06	1.17	0.38	1.14	0.48	1.61	0	0	0	0	0	0	0	0	0
90^thp	0.68	0.49	1.00	2.74	10.74	4.48	13.39	8.63	15.71	0.30	0.46	0.38	1.43	1.88	0	0	0	0.01
Stdev	1.05	0.53	0.65	1.62	4.32	2.44	5.02	3.86	6.02	0.37	0.91	1.02	1.77	1.49	0	0	0	0.19
Prev(%)	91.36	90.24	71.85	94.29	99.23	99.11	99.69	98.54	100.00	49.04	42.67	39.81	64.83	66.67	0	0	0	11.44

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.24	0.25	2.05	0.33	1.03	2.11	1.95	2.04	2.93	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.03	0	0.03	0.20	0.36	0.37	0.29	0.03	0
90^thp	0.39	0.61	9.50	0.69	2.53	5.27	3.55	4.03	5.85	0.01
Stdev	0.56	0.23	4.76	0.40	0.90	1.86	1.60	1.86	2.56	0.01
Prev(%)	100.00	97.06	90.70	100.00	100.00	98.00	100.00	100.00	97.50	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.04	0.14	0.02	0.04	0	0.04	0.04	0.04	0.20	0	0	0	1.23	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.23	0	0	0	0
90^thp	0.49	0.14	0.26	0.04	0.11	0	0.10	0.08	0.14	0.48	0	0	0	1.23	0	0	0	0
Stdev	0.20	0.08	0.17	0.07	0.14	0	0.08	0.12	0.08	0.65	0.02	0	0	0	0	0	0	0
Prev(%)	75.00	54.04	70.83	29.41	20.75	0	37.50	18.75	28.00	30.28	0.45	0	0	100.00	0	0	0.51	0.73

[Species:Schaalia cardiffensis]	[Species:Schaalia dentiphila]	[Species:Schaalia georgiae]	[Species:Schaalia hongkongensis]	[Species:Schaalia lingnae]
[Species:Schaalia meyeri]	[Species:Schaalia odontolytica]	[Species:Schaalia sp. HMT-172]	[Species:Schaalia sp. HMT-180]	[Species:Schaalia sp. HMT-240]
[Species:Schaalia sp. HMT-404]

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