HOMD ::Species:Schaalia lingnae

Species: Schaalia lingnae (HMT-0181) Primary Body Site: Oral

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Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia lingnae

LINKS: Ecology Home | HMT-0181: [Body Sites Data] [Taxon Description] | Life Page: Schaalia lingnae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Schaalia lingnae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	0	0.02	0.06	0.04	0.17	0.31	0.19	0.72	0.01	0	0	0.09	0	0	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.04	0.04	0.06	0.03	0.08	0	0	0	0.09	0	0	0	0
90^thp	0.01	0.01	0.01	0.02	0.14	0.04	0.35	0.82	0.42	1.89	0.03	0	0	0.09	0	0	0	0
Stdev	0.01	0.02	0	0.03	0.13	0	0.16	0.35	0.20	0.85	0.03	0	0	0	0	0	0.05	0.07
Prev(%)	4.17	1.01	0	13.33	10.53	100.00	37.50	85.71	54.55	95.04	1.54	0	0	0	0	0	0	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to S. lingnae [Not Validly Published], S. sp. HMT 172, and S. sp. HMT 180 were assigned one third to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0.01	0.03	0.19	0.76	0.51	0.58	0.54	1.39	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.07	0.01	0.07	0.07	0.18	0
90^thp	0.02	0.02	0.08	0.46	1.41	1.27	1.14	1.16	3.07	0
Stdev	0.03	0.01	0.09	0.34	0.94	0.59	0.55	0.56	1.50	0.01
Prev(%)	16.88	12.99	33.77	79.22	96.10	89.61	96.10	97.40	100.00	9.09

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. meyeri, S. odontolytica, S. lingnae [Not Validly Published], S. sp. HMT 172, and S. sp. HMT 180 were divided equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.05	0.02	0.03	0.10	0.43	0.27	0.55	0.46	0.81	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.10	0.05	0.10	0.05	0.13	0
90^thp	0.08	0.06	0.08	0.29	1.00	0.64	1.18	1.04	2.05	0
Stdev	0.17	0.04	0.07	0.14	0.36	0.30	0.48	0.49	0.74	0
Prev(%)	70.95	69.59	39.87	89.19	99.32	100.00	97.97	97.97	99.32	5.59

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0.33	0.22	0.37	0.28	0.67	0	0	0	0	0.05	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.02	0.02	0.13	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.73	0.56	0.81	0.56	1.36	0	0	0	0	0.04	0	0	0	0
Stdev	0	0	0	0	0.42	0.34	0.43	0.35	0.62	0	0	0	0	0.23	0	0	0	0
Prev(%)	0	0	0	0	85.91	76.15	91.07	91.33	98.71	0	0	0	0	16.59	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.08	0.57	0.20	0.42	0.28	0.75	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.02	0	0	0.01	0.09	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.25	1.30	0.43	1.04	0.68	1.75	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.14	0.72	0.25	0.48	0.35	0.90	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	50.37	91.05	86.01	88.78	91.00	97.08	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0.01	0.08	0.03	0.12	0.51	0.22	0.29	0.52	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.01	0.03	0.03	0.01	0	0
90^thp	0.01	0.01	0.21	0.07	0.26	1.02	0.45	0.49	1.22	0
Stdev	0.01	0.02	0.20	0.03	0.11	0.63	0.20	0.52	0.92	0
Prev(%)	24.32	32.35	62.79	88.57	92.86	98.00	96.97	96.77	90.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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