HOMD ::Genus:Staphylococcus

Genus: Staphylococcus

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus
Lower rank member(s): show[+]

[Species:Staphylococcus aureus] [Species:Staphylococcus auricularis] [Species:Staphylococcus capitis] [Species:Staphylococcus caprae] [Species:Staphylococcus cohnii]
[Species:Staphylococcus epidermidis] [Species:Staphylococcus haemolyticus] [Species:Staphylococcus hominis] [Species:Staphylococcus lugdunensis] [Species:Staphylococcus pasteuri]
[Species:Staphylococcus pettenkoferi] [Species:Staphylococcus saccharolyticus] [Species:Staphylococcus schleiferi] [Species:Staphylococcus warneri]

LINKS: Ecology Home | Life Page: Staphylococcus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Staphylococcus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0.01	0	0.01	0.06	0	0	6.73	12.32	9.13	3.03	0.03	0	0.02	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0.31	1.51	1.05	3.03	0.01	0	0	0
90^thp	0	0	0	0	0.01	0	0.02	0.18	0.01	0	13.59	29.98	20.81	3.03	0.07	0.01	0.05	0.01
Stdev	0	0	0	0	0.01	0	0.01	0.17	0.01	0.01	12.41	13.20	9.48	0	0.04	0	0.07	0.02
Prev(%)	0	0	0	0	0	0	0	14.29	0	0.71	66.15	100.00	100.00	0	0	0	2.13	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0	0.02	0.04	0.30	0.05	0.01	0	16.08	20.75	20.50	12.39	12.44	0.09	0.15	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	2.70	1.48	1.54	0.29	0.33	0	0	0	0
90^thp	0	0.01	0	0	0.04	0.08	0.06	0.02	0	35.02	52.76	53.97	39.67	43.21	0.27	0.12	0	0
Stdev	0	0.03	0	0.25	0.15	2.55	0.33	0.06	0	14.79	20.71	21.25	19.28	21.21	0.17	0.64	0	0
Prev(%)	0	14.57	0	1.37	28.19	33.85	27.68	25.33	0	99.33	99.14	99.72	96.55	96.31	66.20	59.46	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	3.16	3.74	2.64	0.34	0.46	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0.07	0.02	0.01	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	6.34	10.63	4.99	0.32	1.27	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	6.98	8.34	6.80	1.44	1.34	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	96.94	94.90	91.67	53.10	60.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.23	0	15.56
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	2.05
90^thp	0	0	0	0.01	0.01	0	0	0.02	0	31.74
Stdev	0.01	0.01	0	0.01	0	0	0	1.25	0	23.18
Prev(%)	18.92	14.71	20.93	37.14	28.57	20.00	21.21	41.94	12.50	100.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0.02	0	0	0.03	0	0.01	8.19	10.55	7.87	3.11	0.01	0	0.01	0.12
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	1.19	0.55	3.11	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	21.63	23.10	16.79	3.11	0.02	0	0	0.27
Stdev	0	0	0	0	0.38	0	0	0.12	0	0.10	12.65	11.00	7.52	0	0.03	0	0.09	0.46
Prev(%)	0	0.25	0	0	2.13	0	0	6.25	4.00	1.41	86.49	100.00	100.00	100.00	18.18	0	3.54	18.18

[Species:Staphylococcus aureus]	[Species:Staphylococcus auricularis]	[Species:Staphylococcus capitis]	[Species:Staphylococcus caprae]	[Species:Staphylococcus cohnii]
[Species:Staphylococcus epidermidis]	[Species:Staphylococcus haemolyticus]	[Species:Staphylococcus hominis]	[Species:Staphylococcus lugdunensis]	[Species:Staphylococcus pasteuri]
[Species:Staphylococcus pettenkoferi]	[Species:Staphylococcus saccharolyticus]	[Species:Staphylococcus schleiferi]	[Species:Staphylococcus warneri]

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