Species: Staphylococcus aureus (HMT-0550) Primary Body Site: Nasal
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| HMT-0550: [Body Sites Data]
[Taxon Description]
| Life Page: Staphylococcus aureus
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.06 | 0 | 0 | 1.89 | 0.06 | 0.01 | 0.09 | 0 | 0 | 0 | 0 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.09 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0.01 | 0.18 | 0 | 0 | 0.38 | 0.04 | 0.02 | 0.09 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0.01 | 0.17 | 0 | 0 | 11.23 | 0.22 | 0.01 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.29 | 0 | 0.24 | 4.62 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
No Notes
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to Staphylococcus aureus, Acidovorax temperans, and Corynebacterium diphtheriae were assigned to Staphylococcus aureus at this body site (ANA).
Some of the reads equidistant from these taxa (216-550-591) are included in HMT-550 because they are too close to differentiate at these sites (ANA,LAF,RAF,RRC,THR).
Reads equidistant to HMT-550 and HMT-601 were assigned to each taxon in proportion to the abundance of HMT-550 and HMT-601 individually at this body site (LAF).
HMTs 216-550-591 were not present singularly so these reads were split evenly at these sites (PTO,SUPP)
Reads equidistant to Staphylococcus aureus, Acidovorax temperans, and Corynebacterium diphtheriae were assigned to Staphylococcus aureus at this body site (ANA).
Some of the reads equidistant from these taxa (216-550-591) are included in HMT-550 because they are too close to differentiate at these sites (ANA,LAF,RAF,RRC,THR).
Reads equidistant to HMT-550 and HMT-601 were assigned to each taxon in proportion to the abundance of HMT-550 and HMT-601 individually at this body site (LAF).
HMTs 216-550-591 were not present singularly so these reads were split evenly at these sites (PTO,SUPP)
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.85 | 0 | 0.02 | 0.22 | 0.01 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9.96 | 0 | 0.01 | 0.04 | 0.02 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0.01 | 0 | 7.14 | 0 | 0.10 | 1.85 | 0.08 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 1.99 | 0 | 0 | 0 | 0 | 10.42 | 11.33 | 0 | 33.67 | 0 | 15.30 | 19.54 | 17.51 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.19 | 0 | 4.56 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.02 | 0 | 4.15 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.02 | 0 | 17.53 |
| Prev(%) | 2.70 | 5.88 | 6.98 | 8.57 | 7.14 | 4.00 | 9.09 | 32.26 | 5.00 | 95.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0 | 0 | 2.34 | 0.10 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.47 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.12 | 0 | 0 | 9.46 | 0.36 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.25 | 0 | 0.47 | 18.92 | 12.50 | 0 | 0 | 0 | 0 | 0 | 0 |
