Species: Staphylococcus capitis (HMT-0116) Primary Body Site: Skin
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| HMT-0116: [Body Sites Data]
[Taxon Description]
| Life Page: Staphylococcus capitis
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.27 | 1.48 | 0.56 | 0.15 | 0 | 0 | 0 | 0 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.20 | 0.07 | 0.15 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.40 | 2.96 | 1.58 | 0.15 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.01 | 2.75 | 0.73 | 0 | 0 | 0 | 0.01 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.69 | 86.96 | 70.00 | 0 | 0 | 0 | 0 | 0 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
No Notes
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Because HMT-567 is not present individually, all equidistant reads were assigned to HMT-116 at these sites (ANA,LRC,RAF,RRC,SAL).
Reads equidistant to HMT-116 and HMT-567 were assigned to each taxon in proportion to the abundance of HMT-116 and HMT-567 individually at this body site (LAF).
Neither HMT-116 nor HMT-567 were present singularly so these reads were split evenly at this site (THR).
Because HMT-567 is not present individually, all equidistant reads were assigned to HMT-116 at these sites (ANA,LRC,RAF,RRC,SAL).
Reads equidistant to HMT-116 and HMT-567 were assigned to each taxon in proportion to the abundance of HMT-116 and HMT-567 individually at this body site (LAF).
Neither HMT-116 nor HMT-567 were present singularly so these reads were split evenly at this site (THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0.24 | 0.01 | 0 | 0 | 0.69 | 1.60 | 2.32 | 3.87 | 3.48 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0.02 | 0 | 0 | 0 | 1.51 | 3.22 | 3.63 | 9.04 | 6.75 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 2.49 | 0.04 | 0 | 0 | 1.77 | 5.37 | 7.49 | 8.95 | 9.42 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 16.15 | 6.25 | 0 | 0 | 84.00 | 84.48 | 86.97 | 74.14 | 79.26 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.01 | 0 | 0.28 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.13 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.07 | 0 | 0.49 |
| Prev(%) | 12.16 | 5.88 | 6.98 | 28.57 | 14.29 | 10.00 | 12.12 | 6.45 | 5.00 | 95.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.13 | 1.31 | 0.45 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.06 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.12 | 3.10 | 1.35 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.73 | 2.53 | 0.63 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15.31 | 91.67 | 87.50 | 0 | 0 | 0 | 0.51 | 0 |
