Species: Staphylococcus epidermidis (HMT-0601) Primary Body Site: Skin
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| HMT-0601: [Body Sites Data]
[Taxon Description]
| Life Page: Staphylococcus epidermidis
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.28 | 9.42 | 8.06 | 1.39 | 0.01 | 0 | 0.01 | 0 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.10 | 0.83 | 0.74 | 1.39 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0.01 | 0 | 0.01 | 0 | 0 | 0 | 9.65 | 25.24 | 19.09 | 1.39 | 0.02 | 0 | 0.01 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0.01 | 0 | 5.17 | 10.59 | 8.56 | 0 | 0.01 | 0 | 0.05 | 0.01 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.47 | 66.15 | 100.00 | 100.00 | 0 | 0 | 0 | 2.13 | 0.27 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
No Notes
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-550 and HMT-601 were assigned to each taxon in proportion to the abundance of HMT-550 and HMT-601 individually at this body site (LAF).
Reads equidistant to HMT-550 and HMT-601 were assigned to each taxon in proportion to the abundance of HMT-550 and HMT-601 individually at this body site (LAF).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0.01 | 0 | 0 | 0.04 | 0.06 | 0.04 | 0.01 | 0 | 12.04 | 18.35 | 17.64 | 3.78 | 3.23 | 0.05 | 0.10 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.69 | 1.12 | 1.01 | 0.03 | 0.03 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0.01 | 0 | 0 | 0.04 | 0.04 | 0.03 | 0.01 | 0 | 27.36 | 48.93 | 45.34 | 6.28 | 7.14 | 0.17 | 0.04 | 0 | 0 |
| Stdev | 0 | 0.03 | 0 | 0 | 0.15 | 0.35 | 0.30 | 0.06 | 0 | 13.45 | 19.55 | 19.12 | 8.65 | 5.91 | 0.10 | 0.46 | 0 | 0 |
| Prev(%) | 0 | 13.91 | 0 | 0 | 28.19 | 25.39 | 16.96 | 16.67 | 0 | 99.33 | 99.14 | 98.87 | 90.81 | 90.78 | 60.56 | 44.59 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0 | 10.20 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.93 |
| 90thp | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 | 0 | 20.07 |
| Stdev | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0.15 | 0 | 16.63 |
| Prev(%) | 16.22 | 5.88 | 11.63 | 37.14 | 21.43 | 16.00 | 15.15 | 12.90 | 7.50 | 95.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0.02 | 0 | 0 | 0 | 0 | 0.01 | 5.59 | 8.06 | 7.34 | 1.60 | 0.01 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.76 | 0.53 | 1.60 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.37 | 18.09 | 15.31 | 1.60 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0.38 | 0 | 0 | 0 | 0 | 0.10 | 8.99 | 9.03 | 7.37 | 0 | 0.03 | 0 | 0.03 | 0.01 |
| Prev(%) | 0 | 0.25 | 0 | 0 | 1.60 | 0 | 0 | 0 | 4.00 | 0.94 | 82.43 | 100.00 | 100.00 | 100.00 | 9.09 | 0 | 3.03 | 0.18 |
