HOMD ::Species:Staphylococcus haemolyticus

Species: Staphylococcus haemolyticus (HMT-0120) Primary Body Site: Nasal

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus haemolyticus

LINKS: Ecology Home | HMT-0120: [Body Sites Data] [Taxon Description] | Life Page: Staphylococcus haemolyticus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Staphylococcus haemolyticus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.07	0.05	0.03	0.04	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0.01	0	0.04	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0.06	0.14	0.08	0.04	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.38	0.05	0.04	0	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	1.54	4.35	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Because HMT-117 is not present individually, all equidistant reads were assigned to HMT-120 at this body site (ANA).

Reads equidistant to HMT-117 and HMT-120 were assigned to each taxon in proportion to the abundance of HMT-117 and HMT-120 individually at this body site (LAF).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0.11	0	0	0.18	0.13	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.06	0	0	0.38	0.45	0.02	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	1.15	0	0	0.64	0.38	0.04	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	27.33	0	0	31.03	32.26	16.90	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	3.16	3.74	2.56	0.34	0.46	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0.07	0.02	0.01	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	6.34	10.63	4.99	0.32	1.27	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	6.98	8.34	6.63	1.44	1.34	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	96.94	94.90	90.74	53.10	60.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	2.94	0	0	0	0	0	0	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.18	0.02	0	0	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0.90	4.17	0	0	0	0	0	0

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