HOMD ::Species:Staphylococcus hominis

Species: Staphylococcus hominis (HMT-0127) Primary Body Site: Skin

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Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus hominis

LINKS: Ecology Home | HMT-0127: [Body Sites Data] [Taxon Description] | Life Page: Staphylococcus hominis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Staphylococcus hominis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0.05	0.14	0.06	1.12	0.01	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0.02	0.01	1.12	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0.12	0.27	0.13	1.12	0.04	0	0.01	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.06	0.22	0.05	0	0.03	0	0.01	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	17.39	6.67	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.02	0	0	0	0	0	0.10	0.70	0.45	3.89	5.42	0.03	0.06	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.19	0.70	0.66	5.28	8.06	0.12	0.07	0	0
Stdev	0	0	0	0.25	0	0	0	0	0	0.33	3.39	2.07	12.36	16.90	0.09	0.32	0	0
Prev(%)	0	0	0	1.37	0	0	0	0	0	46.33	54.02	51.27	65.52	64.52	33.80	31.08	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0	0	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.11
Stdev	0	0	0	0	0	0	0	0	0	0.06
Prev(%)	4.05	0	0	5.71	0	0	0	0	0	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0.06	0	1.51	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	1.51	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0.13	0.02	1.51	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.02	0.18	0.01	0	0.01	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	2.70	25.00	12.50	100.00	9.09	0	0	0

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