HOMD ::Species:Streptococcus intermedius

Species: Streptococcus intermedius (HMT-0644) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus intermedius

LINKS: Ecology Home | HMT-0644: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus intermedius

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus intermedius

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.43	0.10	0.30	0.13	0.05	0.02	0.05	0.01	0.09	0.01	0.01	0	0	0.05	0	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.02	0.01	0.01	0.02	0.02	0.02	0.01	0.01	0.01	0	0	0	0.05	0	0	0	0
90^thp	0.93	0.21	0.44	0.28	0.08	0.02	0.11	0.01	0.25	0.02	0.02	0.01	0.01	0.05	0.01	0.02	0.02	0
Stdev	0.44	0.14	0.82	0.23	0.03	0	0.04	0.01	0.18	0.01	0.01	0.01	0	0	0.01	0.01	0.01	0
Prev(%)	75.00	53.42	29.17	40.00	2.17	0	12.50	0	4.55	0.95	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.41	0.10	0.06	0.02	0.01	0.03	0.12	0.05	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.31	0.25	0.03	0.05	0.05	0.08	0.05	0.04	0.01	0
Stdev	0.51	0.16	0.32	0.05	0.02	0.07	0.56	0.29	0.01	0
Prev(%)	83.12	61.04	15.58	44.16	23.38	40.26	25.97	23.38	14.29	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. constellatus and S. intermedius were assigned to S. intermedius.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.66	0.17	0.04	0.04	0.03	0.05	0.07	0.26	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0	0	0	0	0	0	0	0	0
90^thp	1.50	0.41	0.03	0.11	0.10	0.11	0.12	0.50	0.03	0
Stdev	0.86	0.30	0.25	0.08	0.07	0.12	0.27	0.75	0.02	0
Prev(%)	91.22	81.08	17.57	47.97	45.27	53.38	39.19	60.81	19.59	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.56	0.12	0.08	0.02	0	0.04	0.08	0.09	0	0.01	0.01	0	0.01	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.52	0.27	0.08	0.05	0	0.08	0.05	0.17	0	0.01	0	0	0.01	0	0	0	0	0
Stdev	0.79	0.20	0.32	0.06	0	0.10	0.44	0.33	0	0.03	0.09	0	0.07	0.12	0	0	0	0
Prev(%)	90.73	78.81	34.97	43.15	0	45.38	24.11	36.67	0	11.33	6.61	0	10.35	9.22	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.63	0.17	0.14	0.08	0	0.07	0.10	0.11	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.55	0.44	0.20	0.26	0	0.18	0.10	0.24	0	0	0	0	0	0	0	0	0	0
Stdev	0.87	0.28	0.62	0.18	0	0.14	0.43	0.40	0	0	0	0	0	0	0	0	0	0
Prev(%)	91.61	79.51	31.11	45.66	0	63.09	28.04	37.71	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 576 and 644 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.98	0.57	0.16	0.10	0.30	0.03	0.05	0.18	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.02	0	0	0	0	0	0	0	0
90^thp	2.69	1.44	0.36	0.29	0.76	0.09	0.17	0.88	0.03	0
Stdev	1.66	0.84	0.43	0.16	0.75	0.04	0.10	0.43	0.02	0.01
Prev(%)	94.59	100.00	86.05	91.43	92.86	96.00	87.88	83.87	80.00	10.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.52	0.10	0.33	0.18	0.01	0	0.04	0.06	0.06	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.19	0.24	0.46	0.35	0.02	0	0.11	0	0.07	0	0	0	0	0	0	0	0	0
Stdev	0.59	0.18	1.08	0.48	0.04	0	0.05	0.23	0.20	0.01	0	0	0	0	0	0	0	0
Prev(%)	87.50	69.95	45.83	47.06	12.50	0	50.00	6.25	20.00	3.52	0	4.17	3.13	0	0	7.14	0	0.18

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