HOMD ::Species:Streptococcus oralis

Species: Streptococcus oralis

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus oralis
Lower rank member(s): [Subspecies:subsp. dentisani] [Subspecies:subsp. oralis] [Subspecies:subsp. tigurinus]

LINKS: Ecology Home | Life Page: Streptococcus oralis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 ND:HMPv1v3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus oralis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

Notes:
has subspecies

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.32	3.97	0.90	6.56	6.53	3.92	2.06	0.29	0.68	0.31	0.15	0.13	0.10	4.12	0.01	0.47	0.04	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	1.02	1.06	0.06	2.66	3.26	3.92	0.86	0.12	0.16	0.11	0.01	0.01	0	4.12	0	0	0	0
90^thp	5.57	8.14	1.97	10.75	10.21	3.92	3.77	0.43	0.96	0.55	0.38	0.24	0.24	4.12	0.03	1.24	0.08	0.02
Stdev	2.29	3.10	1.20	3.39	3.56	0	1.31	0.15	1.26	0.26	0.18	0.30	0.25	0	0.01	1.06	0.13	0.07
Prev(%)	95.83	99.75	54.17	100.00	98.76	100.00	75.00	85.71	54.55	82.51	4.62	4.35	6.67	100.00	0	12.50	1.06	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.41	2.88	10.11	10.49	8.19	2.52	3.58	3.94	2.52	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.50	0.91	5.55	5.84	3.42	0.55	0.55	0.64	0.57	0
90^thp	4.58	6.36	14.86	14.79	13.08	5.40	8.74	10.50	5.85	0.02
Stdev	2.12	1.96	3.68	3.49	3.83	1.89	3.24	3.76	1.93	0.01
Prev(%)	100.00	100.00	100.00	100.00	100.00	97.40	100.00	100.00	100.00	54.55

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.40	2.01	7.14	7.82	3.11	0.90	1.92	1.85	0.31	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.23	0.51	1.90	2.30	0.75	0.25	0.14	0.13	0.04	0
90^thp	2.88	4.01	13.79	14.13	6.79	1.70	4.77	4.79	0.64	0
Stdev	1.24	1.50	4.97	4.49	2.65	0.75	2.81	2.52	0.39	0.01
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	97.97	11.89

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	3.99	6.60	5.44	8.37	3.32	2.84	3.14	2.78	2.18	0.09
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.43	2.08	0.96	2.56	1.23	0.71	0.84	0.50	0.60	0
90^thp	9.22	12.82	10.60	15.12	6.74	5.07	6.92	5.98	7.11	0.22
Stdev	4.28	4.18	5.49	7.33	2.18	2.29	3.03	3.33	2.60	0.26
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	50.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

Notes:
has subspecies

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.97	2.51	0.32	1.93	2.74	0.11	0.76	0.02	0.06	0.06	0.04	0.06	0.03	2.21	0	0.06	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.17	0.37	0	0.02	0.17	0.11	0.18	0	0	0	0	0	0	2.21	0	0	0	0
90^thp	3.48	5.92	0.57	7.25	6.83	0.11	1.88	0.08	0.15	0.14	0.02	0.08	0.01	2.21	0	0	0	0
Stdev	2.01	2.55	0.97	3.25	3.96	0	0.89	0.04	0.11	0.13	0.24	0.19	0.10	0	0	0.22	0.05	0.01
Prev(%)	100.00	99.75	50.00	94.12	96.01	100.00	100.00	31.25	44.00	69.72	10.81	50.00	21.88	100.00	0	7.14	3.54	0.73

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