HOMD ::Family:Synergistaceae

Family: Synergistaceae

Full Lineage: Bacteria; Synergistota; Synergistia; Synergistales; Synergistaceae
Lower rank member(s): [Genus:Fretibacterium]

LINKS: Ecology Home | Life Page: Synergistaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Synergistaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0.01	0.66	0	0	0	0.02	0	0.01	0	0	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.31	0.03	2.11	0	0	0	0.04	0	0.01	0	0	0	0	0	0	0	0	0
Stdev	0.17	0.04	0.86	0	0.01	0	0.04	0	0.01	0.01	0	0	0	0	0	0	0	0
Prev(%)	29.17	9.11	62.50	0	0	0	0	0	0	0.24	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.21	0.02	0	0	0	0	0.01	0.05	0	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.74	0.05	0	0	0	0	0.01	0.08	0	0	0	0	0	0	0	0	0	0
Stdev	0.50	0.08	0	0	0	0	0.07	0.18	0	0	0	0	0	0.09	0	0	0	0
Prev(%)	47.68	17.88	0	0	0	0	11.31	33.33	0	0	0	0	0	0.46	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.29	0.03	0	0	0	0	0.02	0.06	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.94	0.06	0	0	0	0	0.04	0.15	0	0	0	0	0	0	0	0	0	0
Stdev	0.68	0.15	0	0	0	0	0.09	0.16	0	0	0	0	0	0	0	0	0	0
Prev(%)	46.67	20.00	0	0	0	0	14.02	32.12	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.39	0.02	0	0.03	0.01	0.01	0.01	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.96	0.09	0	0.14	0.03	0.02	0.02	0.04	0	0
Stdev	1.20	0.04	0.01	0.08	0.02	0.01	0.02	0.28	0	0
Prev(%)	43.24	47.06	20.93	34.29	25.00	42.00	36.36	41.94	12.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.01	0.63	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.22	0.02	2.00	0	0	0	0.03	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.11	0.03	0.85	0	0.03	0	0.04	0	0	0.01	0	0	0	0	0	0	0	0
Prev(%)	45.83	12.63	75.00	0	1.06	0	12.50	0	0	0.23	0	0	0	0	0	0	0	0

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