HOMD ::Species:Treponema lecithinolyticum

Species: Treponema lecithinolyticum (HMT-0653) Primary Body Site: Oral

Full Lineage: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema lecithinolyticum

LINKS: Ecology Home | HMT-0653: [Body Sites Data] [Taxon Description] | Life Page: Treponema lecithinolyticum

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Treponema lecithinolyticum

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.32	0.02	0.31	0	0.01	0	0.05	0	0.03	0	0	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.01	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.86	0.05	0.96	0	0.01	0	0.10	0	0.09	0	0	0	0	0	0	0	0	0
Stdev	0.64	0.06	0.46	0	0.03	0	0.04	0	0.07	0	0	0	0	0	0	0	0	0
Prev(%)	54.17	13.16	37.50	0	0.31	0	0	0	9.09	1.18	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.09	0.02	0	0	0	0.02	0	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.12	0.03	0	0	0	0.03	0	0	0	0
Stdev	0.38	0.06	0	0.01	0	0.06	0.01	0.11	0	0
Prev(%)	23.38	12.99	0	7.79	1.30	16.88	5.20	10.39	0	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.23	0.02	0	0	0	0.02	0.01	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.78	0.04	0	0	0	0.07	0	0.05	0	0
Stdev	0.62	0.06	0	0.01	0.01	0.04	0.02	0.11	0	0
Prev(%)	35.13	14.19	0.68	8.11	4.05	27.70	7.43	16.22	1.35	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0	0	0	0	0	0.01	0.04	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.23	0	0	0	0	0	0.01	0.04	0	0	0	0	0	0	0	0	0	0
Stdev	0.24	0	0	0	0	0	0.11	0.18	0	0	0	0	0	0	0	0	0	0
Prev(%)	28.48	0	0	0	0	0	10.42	22.00	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0	0	0	0	0	0	0.04	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.35	0	0	0	0	0	0	0.10	0	0	0	0	0	0	0	0	0	0
Stdev	0.33	0	0	0	0	0	0	0.15	0	0	0	0	0	0	0	0	0	0
Prev(%)	32.10	0	0	0	0	0	0	24.09	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.10	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.13	0	0	0	0	0	0	0.01	0	0
Stdev	0.42	0.01	0	0.01	0	0	0	0	0	0
Prev(%)	25.68	14.71	6.98	14.29	10.71	12.00	15.15	16.13	0	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.31	0.02	0.26	0	0	0	0.04	0.08	0.03	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.87	0.04	0.73	0	0	0	0.13	0.09	0.06	0	0	0	0	0	0	0	0	0
Stdev	0.61	0.07	0.51	0	0.06	0	0.07	0.29	0.08	0	0	0	0	0	0	0	0	0
Prev(%)	62.50	17.17	45.83	0	1.60	0	25.00	12.50	28.00	1.64	0	0	0	0	0	0	0	0

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