HOMD ::Species:Veillonella rogosae

Species: Veillonella rogosae (HMT-0158) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; Veillonella rogosae

LINKS: Ecology Home | HMT-0158: [Body Sites Data] [Taxon Description] | Life Page: Veillonella rogosae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Veillonella rogosae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0.16	0.08	0.22	0.59	0.90	1.84	1.93	3.07	3.26	0.22	0.02	0	0.36	0	0.02	0.08	0.03
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.02	0.01	0.01	0.08	0.90	1.25	0.87	0.30	1.18	0	0	0	0.36	0	0	0	0
90^thp	0.22	0.29	0.19	0.56	1.24	0.90	2.64	3.03	9.10	6.35	0.15	0.04	0.01	0.36	0	0.05	0.03	0.03
Stdev	0.08	0.41	0.13	0.30	0.72	0	0.61	0.98	3.46	2.31	1.04	0.03	0.01	0	0	0.04	0.65	0.20
Prev(%)	25.00	50.13	0	40.00	72.45	100.00	100.00	100.00	86.36	99.76	3.08	0	0	0	0	12.50	1.06	5.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.02	0.02	0.17	0.70	1.92	3.01	1.71	2.70	3.05	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.23	0.20	0.03	0.05	0.05	0
90^thp	0.06	0.06	0.43	1.59	4.47	6.87	4.74	7.13	7.36	0.01
Stdev	0.05	0.05	0.32	0.97	2.01	2.89	2.58	3.42	3.33	0.02
Prev(%)	31.17	35.06	66.23	88.31	94.81	93.51	92.21	90.91	94.81	11.69

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to V. atypica, V. denticariosi, V. dispar, V. parvula, and V. rogosae were assigned one-fifth to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.80	0.75	0.28	0.57	1.17	2.32	1.55	1.41	2.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.08	0	0.08	0.32	0.87	0.55	0.46	0.81	0
90^thp	2.05	1.71	0.78	1.40	2.31	3.92	2.69	2.61	3.27	0.01
Stdev	1.11	0.86	0.59	0.56	0.78	1.19	0.85	0.87	0.97	0.04
Prev(%)	98.65	100.00	91.22	100.00	100.00	100.00	100.00	100.00	100.00	29.37

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-158 and HMT-160 were assigned to each taxon in proportion to the abundance of HMT-158 and HMT-160 individually at these sites (AKE,BMU,HPA,LAF,PTO,SAL,THR,TDO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0	0.21	0.79	1.91	2.43	1.80	2.46	2.74	0.05	0.05	0.02	0.08	0.13	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.01	0.20	0.20	0.03	0.06	0.07	0	0	0	0	0	0	0	0	0
90^thp	0.05	0	0.54	2.19	4.33	5.66	4.95	6.26	7.31	0.09	0.03	0.03	0.20	0.25	0	0	0	0
Stdev	0.07	0	0.33	0.99	2.07	2.37	2.57	3.44	3.28	0.24	0.43	0.11	0.28	0.74	0	0	0	0
Prev(%)	50.33	0	76.92	92.47	97.99	94.61	94.34	96.67	96.77	31.00	18.68	18.98	26.44	22.58	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.04	0.36	1.14	3.40	3.04	2.06	2.71	3.33	0.18	0.17	0.25	0.31	0.53	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.25	0.28	0.04	0.08	0.12	0	0	0	0	0	0	0	0	0
90^thp	0	0.08	0.94	2.86	8.07	6.34	5.89	7.42	8.78	0.49	0.12	0.28	0.56	1.63	0	0	0	0
Stdev	0	0.19	0.83	1.67	3.26	2.93	2.93	3.44	3.74	0.49	0.77	1.15	1.11	1.52	0	0	0	0
Prev(%)	0	45.85	66.67	88.83	96.42	98.21	93.46	97.08	97.57	53.26	28.02	33.33	38.62	50.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 158, 160, and 161 were distributed equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.02	0.04	0.51	0.85	1.20	1.08	1.64	1.04	1.48	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.01	0.12	0.03	0.08	0.02	0.01	0
90^thp	0.04	0.11	1.76	2.22	2.97	2.31	3.17	2.45	3.62	0
Stdev	0.03	0.09	0.83	1.11	1.55	0.87	4.07	1.63	1.82	0.02
Prev(%)	78.38	91.18	97.67	100.00	100.00	98.00	100.00	96.77	100.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.07	0	0.17	1.00	1.36	2.15	1.57	3.24	3.67	0.12	0	0	0.07	0	0	0.06	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	1.36	0.51	0	0	0.04	0	0	0	0.07	0	0	0	0
90^thp	0.01	0.07	0	0.38	2.69	1.36	4.13	3.17	12.10	9.87	0	0	0	0.07	0	0	0	0
Stdev	0.04	0.58	0	0.45	1.64	0	1.66	3.31	5.04	4.28	0.91	0	0	0	0	0	0.65	0.09
Prev(%)	12.50	42.17	0	41.18	88.83	100.00	87.50	68.75	80.00	94.37	5.86	4.17	0	100.00	0	7.14	1.01	9.46

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