HOMD ::Family:Weeksellaceae

Family: Weeksellaceae

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae
Lower rank member(s): [Genus:Chryseobacterium] [Genus:Cloacibacterium] [Genus:Riemerella] [Genus:Weeksellaceae [G1]]

LINKS: Ecology Home | Life Page: Weeksellaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Weeksellaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.01	0	0.01	0.01	0	0.01	0	0	0	0.04	0.01	0	0.41	0	0	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.41	0	0	0	0
90^thp	0.03	0.02	0	0.02	0.02	0	0.01	0.01	0.01	0.01	0.06	0.01	0.01	0.41	0.01	0.01	0	0.01
Stdev	0.02	0.01	0	0.01	0.04	0	0.01	0	0	0	0.20	0.02	0.01	0	0	0	0.07	0.01
Prev(%)	0	0.51	0	0	1.24	0	0	0	0	0	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.22	1.71	1.00	0.72	0.27	0.57	0.46	0.50	0.27	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.14	0.24	0.04	0.06	0.02	0	0	0	0	0
90^thp	2.48	3.44	2.65	1.63	0.57	1.07	1.03	1.08	0.64	0
Stdev	1.10	1.44	1.25	1.03	0.29	1.03	0.96	0.84	0.41	0
Prev(%)	100.00	100.00	93.51	97.40	90.91	84.42	84.42	81.82	79.22	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.44	0.62	0.37	0.62	0.15	0.33	0.24	0.21	0.13	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.06	0	0.02	0	0.02	0	0	0	0
90^thp	1.10	1.25	0.80	1.06	0.38	0.76	0.54	0.48	0.34	0
Stdev	0.47	0.61	0.87	2.58	0.19	0.45	0.56	0.32	0.25	0
Prev(%)	89.86	94.59	77.03	92.57	81.08	91.22	77.03	79.73	65.54	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.32	1.59	1.22	0.79	0.24	0.56	0.29	0.42	0.21	0.03	0.06	0.04	0.17	0.18	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.13	0.33	0.14	0.06	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0
90^thp	2.83	3.04	2.58	1.78	0.54	1.39	0.70	0.84	0.51	0.10	0.05	0.07	0.30	0.40	0	0	0	0
Stdev	1.83	1.33	1.42	0.92	0.25	0.74	0.43	0.75	0.31	0.10	0.27	0.18	0.75	0.71	0	0	0	0
Prev(%)	99.34	100.00	96.50	94.52	87.25	87.69	84.82	91.33	85.81	28.00	25.00	25.50	22.41	29.49	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.14	1.59	2.11	1.78	0.43	0.58	0.27	0.44	0.26	0	0.07	0.09	0.12	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.18	0.40	0.18	0.17	0	0.05	0	0.02	0	0	0	0	0	0	0	0	0	0
90^thp	2.53	3.26	4.17	3.66	0.94	1.20	0.67	0.96	0.61	0	0.04	0.04	0.49	0	0	0	0	0
Stdev	1.10	1.27	4.33	3.51	0.48	0.72	0.45	0.66	0.33	0	0.40	0.50	0.34	0	0	0	0	0
Prev(%)	98.52	99.76	96.54	97.77	85.93	92.26	76.32	91.48	86.13	0	15.29	14.81	25.52	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.18	0.28	0.05	0.06	0.06	0.04	0.04	0.03	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0	0.01	0	0.01	0	0	0	0
90^thp	0.38	0.62	0.12	0.11	0.13	0.09	0.08	0.09	0.07	0
Stdev	0.51	0.45	0.08	0.08	0.07	0.04	0.09	0.04	0.04	0
Prev(%)	90.54	97.06	95.35	94.29	89.29	94.00	84.85	90.32	80.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0	0	0	0.01	0	0	0	0	0	0.01	0	0	0.48	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.48	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.48	0	0	0	0
Stdev	0.03	0	0	0.01	0.06	0	0	0	0	0	0.11	0	0	0	0	0	0.06	0
Prev(%)	8.33	1.26	0	5.88	6.65	0	0	0	0	0	3.60	0	0	100.00	0	0	1.01	0.36

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