HOMD ::Subspecies:clade-575

Subspecies: clade-575 (HMT-0575) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter concisus; clade-575

LINKS: Ecology Home | HMT-0575: [Body Sites Data] [Taxon Description] | Life Page: clade-575

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Subspecies: clade-575

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.26	0.25	0.09	0.32	0.06	0.05	0.26	0.42	0.23	0.22	0.02	0	0	0.01	0	0.04	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0	0.05	0.05	0.17	0.07	0.05	0	0	0	0.01	0	0	0	0
90^thp	0.74	0.71	0.23	0.95	0.10	0.05	0.45	0.71	0.51	0.43	0.01	0	0	0.01	0	0.10	0	0
Stdev	0.31	0.40	0.15	0.53	0.21	0	0.18	0.28	0.17	0.17	0.10	0.01	0	0	0	0.11	0.01	0.03
Prev(%)	58.33	66.33	20.83	46.67	5.88	100.00	37.50	100.00	50.00	91.49	3.08	0	0	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.39	0.53	1.19	0.41	0.96	6.29	3.30	3.00	2.94	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.18	0.98	0.33	0.42	0.36	0
90^thp	1.08	1.45	2.65	1.22	2.03	12.76	7.97	6.62	6.29	0
Stdev	0.49	1.08	3.66	0.55	0.90	5.23	3.17	3.13	2.74	0.01
Prev(%)	84.42	81.82	66.23	85.71	98.70	97.40	98.70	100.00	98.70	3.90

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to C. curvus and C. concisus were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.08	0.11	0.19	0.08	0.16	1.01	0.41	0.36	0.36	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.23	0.34	0.45	0.20	0.42	2.85	1.15	0.99	0.80	0
Stdev	0.14	0.20	0.60	0.15	0.21	1.26	0.52	0.52	0.52	0
Prev(%)	62.84	66.22	44.59	62.84	76.35	83.78	81.08	79.05	77.03	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.38	0.51	1.12	0.32	0.96	5.22	2.19	3.08	3.00	0	0.01	0	0.07	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.08	0.66	0.27	0.44	0.60	0	0	0	0	0	0	0	0	0
90^thp	1.07	1.43	2.80	0.83	2.03	10.15	4.79	6.90	6.10	0	0.01	0	0.12	0.02	0	0	0	0
Stdev	0.66	1.02	2.85	0.42	1.04	4.60	2.08	3.08	2.81	0	0.07	0	0.30	0.15	0	0	0	0
Prev(%)	87.42	88.08	81.12	84.25	94.63	96.15	97.32	100.00	100.00	0	11.21	0	15.52	11.52	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.26	0.73	0.30	0.68	2.99	1.51	1.37	1.44	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.06	0.38	0.10	0.13	0.17	0	0	0	0	0	0	0	0	0
90^thp	0.56	0.75	1.80	0.80	1.52	6.75	3.69	3.24	3.11	0	0	0	0	0	0	0	0	0
Stdev	0.36	0.47	2.10	0.49	0.70	2.84	1.51	1.48	1.55	0	0	0	0	0	0	0	0	0
Prev(%)	78.77	80.00	58.27	78.66	92.84	97.92	94.08	98.78	98.78	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.24	0.10	0.09	0.14	0.23	0.16	0.56	0.42	0.23	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.03	0.02	0.12	0.01	0.01	0
90^thp	0.54	0.18	0.29	0.33	0.54	0.24	1.02	1.14	0.47	0
Stdev	0.72	0.17	0.13	0.25	0.20	0.28	0.79	0.40	0.31	0
Prev(%)	83.78	91.18	90.70	85.71	100.00	96.00	100.00	96.77	95.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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