Subspecies: clade-638 (HMT-0638) Primary Body Site: Oral
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.08 | 0.10 | 0.03 | 0.32 | 0.76 | 1.70 | 0.73 | 0.82 | 0.75 | 1.34 | 0.07 | 0.02 | 0.01 | 0.32 | 0 | 0.02 | 0.02 | 0.01 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.03 | 0.02 | 0 | 0.12 | 0.32 | 1.70 | 0.40 | 0.46 | 0.13 | 0.38 | 0.01 | 0 | 0 | 0.32 | 0 | 0 | 0 | 0 |
| 90thp | 0.11 | 0.17 | 0.05 | 0.49 | 1.20 | 1.70 | 0.99 | 1.34 | 1.53 | 2.59 | 0.11 | 0.04 | 0.02 | 0.32 | 0 | 0.05 | 0.04 | 0.01 |
| Stdev | 0.14 | 0.18 | 0.03 | 0.16 | 0.78 | 0 | 0.28 | 0.47 | 0.64 | 0.96 | 0.20 | 0.02 | 0.02 | 0 | 0 | 0.03 | 0.09 | 0.08 |
| Prev(%) | 12.50 | 38.99 | 0 | 40.00 | 73.07 | 100.00 | 87.50 | 100.00 | 86.36 | 99.76 | 3.08 | 0 | 0 | 0 | 0 | 12.50 | 1.06 | 0.80 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.52 | 0.69 | 0.29 | 0.60 | 0.82 | 0.48 | 0.39 | 0.37 | 0.68 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.04 | 0.07 | 0.02 | 0.07 | 0.12 | 0.06 | 0.03 | 0.06 | 0.17 | 0 |
| 90thp | 1.46 | 1.69 | 1.03 | 1.52 | 2.03 | 0.99 | 0.90 | 0.88 | 1.81 | 0 |
| Stdev | 0.56 | 0.69 | 0.55 | 0.64 | 1.14 | 0.50 | 0.39 | 0.34 | 0.58 | 0 |
| Prev(%) | 100.00 | 98.70 | 98.70 | 100.00 | 100.00 | 97.40 | 98.70 | 100.00 | 100.00 | 14.29 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.
Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.
Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.31 | 0.36 | 4.40 | 4.92 | 5.00 | 1.10 | 2.42 | 2.00 | 1.29 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.01 | 0.01 | 0.13 | 1.17 | 0.96 | 0.30 | 0.34 | 0.21 | 0.38 | 0 |
| 90thp | 0.64 | 0.65 | 10.33 | 10.77 | 11.00 | 2.09 | 5.74 | 4.05 | 2.61 | 0 |
| Stdev | 0.68 | 0.98 | 4.52 | 3.80 | 4.09 | 0.78 | 2.65 | 2.40 | 0.94 | 0.01 |
| Prev(%) | 92.57 | 93.24 | 99.32 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 12.59 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-638 because they are too close to differentiate at these sites (AKE,THR).
Reads equidistant to HMT-061 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-061 and HMT-638 individually at these sites (BMU,HPA,RAF).
Neither HMT-431 nor HMT-638 were present singularly so these reads were split evenly at this site (MVA).
Reads equidistant to HMT-431 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-431 and HMT-638 individually at this body site (THR).
Because HMT-431 is not present individually, all equidistant reads were assigned to HMT-638 at these sites (AKE,LRC,PTO,RRC,TDO).
Because HMT-074 is not present individually, all equidistant reads were assigned to HMT-638 at these sites (ANA,LAF,SAL).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-638 because they are too close to differentiate at these sites (AKE,THR).
Reads equidistant to HMT-061 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-061 and HMT-638 individually at these sites (BMU,HPA,RAF).
Neither HMT-431 nor HMT-638 were present singularly so these reads were split evenly at this site (MVA).
Reads equidistant to HMT-431 and HMT-638 were assigned to each taxon in proportion to the abundance of HMT-431 and HMT-638 individually at this body site (THR).
Because HMT-431 is not present individually, all equidistant reads were assigned to HMT-638 at these sites (AKE,LRC,PTO,RRC,TDO).
Because HMT-074 is not present individually, all equidistant reads were assigned to HMT-638 at these sites (ANA,LAF,SAL).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.12 | 0.11 | 0.39 | 1.46 | 3.83 | 2.30 | 2.83 | 2.89 | 4.07 | 0.18 | 0.16 | 0.11 | 0.69 | 0.69 | 0 | 0.05 | 0 | 4.82 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0.01 | 0.19 | 0.91 | 0.34 | 0.55 | 0.70 | 0.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.20 |
| 90thp | 0.30 | 0.28 | 1.08 | 3.62 | 7.45 | 4.82 | 5.38 | 5.20 | 7.52 | 0.52 | 0.38 | 0.25 | 1.90 | 1.99 | 0 | 0.08 | 0 | 10.74 |
| Stdev | 0.28 | 0.21 | 0.59 | 1.55 | 3.06 | 2.29 | 2.46 | 2.65 | 2.97 | 0.44 | 0.50 | 0.37 | 1.31 | 1.43 | 0 | 0.24 | 0 | 5.77 |
| Prev(%) | 76.16 | 83.44 | 92.31 | 97.94 | 100.00 | 96.92 | 99.41 | 100.00 | 100.00 | 67.33 | 52.01 | 49.58 | 68.39 | 66.82 | 0 | 74.32 | 0 | 94.77 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 073, 578, and 638 were assigned one-third to each taxon.
Reads equally close to HMT 073 and 638 were assigned half to each taxon.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
Reads equally close to HMT 073, 578, and 638 were assigned one-third to each taxon.
Reads equally close to HMT 073 and 638 were assigned half to each taxon.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.51 | 0.78 | 2.23 | 2.57 | 2.06 | 4.38 | 1.90 | 1.94 | 2.17 | 0.04 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.02 | 0.19 | 0.20 | 0.70 | 0.43 | 0.53 | 0.36 | 0.23 | 0.48 | 0 |
| 90thp | 1.17 | 1.73 | 5.46 | 4.74 | 4.03 | 7.52 | 3.83 | 5.19 | 4.40 | 0.09 |
| Stdev | 0.75 | 0.62 | 2.60 | 1.93 | 1.34 | 6.43 | 1.59 | 1.85 | 1.65 | 0.08 |
| Prev(%) | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 96.77 | 100.00 | 45.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
