HOMD ::Subspecies:clade-681

Subspecies: clade-681 (HMT-0681) Primary Body Site: Oral

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia mucilaginosa; clade-681

LINKS: Ecology Home | HMT-0681: [Body Sites Data] [Taxon Description] | Life Page: clade-681

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Subspecies: clade-681

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0.11	0.07	0.13	2.61	10.41	0.71	0.69	0.92	3.55	0.11	0.04	0.01	1.43	0	0.09	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0.08	10.41	0.16	0.27	0.15	0.50	0.01	0	0	1.43	0	0	0	0
90^thp	0.31	0.19	0.19	0.39	7.69	10.41	1.48	1.33	2.75	8.34	0.20	0.10	0.04	1.43	0	0.21	0.02	0
Stdev	0.21	0.30	0.16	0.20	4.35	0	0.68	0.50	0.97	3.68	0.23	0.07	0.01	0	0	0.23	0.03	0.18
Prev(%)	33.33	31.90	12.50	53.33	81.73	100.00	62.50	100.00	90.91	99.53	3.08	13.04	6.67	0	0	12.50	0	0.80

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.05	0.07	0.47	2.26	3.62	1.50	2.39	1.80	4.89	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.07	0.69	0.07	0.14	0.13	0.69	0
90^thp	0.11	0.13	1.45	5.95	6.91	3.76	6.54	4.32	12.79	0
Stdev	0.13	0.21	1.08	3.34	3.47	2.70	2.52	2.32	5.06	0.01
Prev(%)	50.65	48.05	64.94	94.81	98.70	94.81	94.81	97.40	100.00	3.90

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to R. dentocariosa and R. mucilaginosa were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.47	0.88	0.09	0.52	0.52	0.21	0.25	0.20	0.66	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.46	2.42	0.15	1.37	1.42	0.50	0.66	0.51	1.76	0
Stdev	0.97	1.86	0.33	1.17	0.77	0.35	0.36	0.32	1.04	0
Prev(%)	68.92	74.32	39.87	71.62	80.41	74.32	70.95	73.65	80.41	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.11	0.06	0.56	3.67	4.25	1.40	1.72	1.41	4.07	0.12	0.05	0.06	0.25	0.27	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.08	0.46	0	0.10	0.07	0.23	0	0	0	0	0	0	0	0	0
90^thp	0.25	0.16	1.85	11.02	8.34	3.56	4.04	3.54	10.53	0.20	0.12	0.07	0.73	0.67	0	0	0	0
Stdev	0.32	0.14	1.26	6.23	4.98	2.36	1.99	2.00	5.03	0.52	0.22	0.54	0.59	0.70	0	0	0	0
Prev(%)	56.95	58.28	77.62	92.47	97.31	87.69	96.43	94.00	96.13	50.00	35.34	32.30	51.72	51.61	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0.06	0.64	2.78	3.29	0.79	1.21	0.99	2.85	0.10	0.13	0.13	0.21	0.32	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.03	0.36	0.03	0.01	0.04	0.20	0	0	0	0	0	0	0	0	0
90^thp	0.07	0.10	1.25	9.06	8.45	1.66	3.00	2.51	6.84	0.15	0.19	0.12	0.48	0.48	0	0	0	0
Stdev	0.20	0.27	2.60	5.25	3.78	1.55	1.93	1.70	4.20	0.34	0.59	0.75	0.76	1.07	0	0	0	0
Prev(%)	33.58	35.85	54.81	90.57	98.47	91.37	90.97	94.89	98.78	43.30	28.98	29.32	46.90	45.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.12	0.08	0.48	2.17	3.29	2.74	0.93	0.79	1.57	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.04	0.25	0.22	0.07	0.04	0.01	0
90^thp	0.08	0.13	0.72	3.99	8.15	7.21	2.13	1.56	4.21	0
Stdev	0.52	0.22	1.38	4.60	5.62	3.06	0.90	1.31	2.14	0
Prev(%)	82.43	88.23	90.70	100.00	100.00	100.00	100.00	96.77	97.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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