HOMD ::Subspecies:subsp. socranskii

Subspecies: subsp. socranskii (HMT-0769) Primary Body Site: Oral

Full Lineage: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema socranskii; subsp. socranskii

LINKS: Ecology Home | HMT-0769: [Body Sites Data] [Taxon Description] | Life Page: subsp. socranskii

Hide Legend

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Subspecies: subsp. socranskii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.04	0.46	0	0	0	0.01	0	0.04	0	0	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.54	0.12	1.09	0	0.01	0	0.02	0	0.07	0	0	0	0	0	0	0	0	0
Stdev	0.33	0.09	0.42	0	0.01	0	0.01	0	0.06	0	0	0	0	0	0	0	0	0
Prev(%)	54.17	21.01	79.17	0	0.31	0	0	0	4.55	0.71	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.41	0.17	0	0.01	0.01	0.03	0.04	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.41	0.40	0	0.02	0	0.07	0.07	0.24	0.01	0
Stdev	0.71	0.47	0	0.04	0.03	0.05	0.12	0.16	0.01	0
Prev(%)	57.14	44.16	0	12.99	9.09	35.06	25.97	42.86	11.69	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to T. socranskii, T. sp. HMT 268, and T. sp. HMT 269 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.30	0.13	0	0.01	0	0.03	0.01	0.03	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.85	0.39	0	0.02	0.01	0.07	0.02	0.07	0.01	0
Stdev	0.40	0.29	0	0.06	0.02	0.04	0.03	0.07	0.01	0
Prev(%)	73.65	62.84	3.38	25.68	10.81	56.08	30.41	45.95	18.92	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.32	0.08	0	0	0	0	0	0.05	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.97	0.24	0	0	0	0	0	0.13	0	0	0	0	0	0	0	0	0	0
Stdev	0.60	0.20	0	0	0	0	0	0.14	0	0	0	0	0	0	0	0	0	0
Prev(%)	61.59	41.06	0	0	0	0	0	42.00	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.67	0.18	0	0	0	0.06	0	0.10	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.86	0.57	0	0	0	0.16	0	0.31	0	0	0	0	0	0	0	0	0	0
Stdev	1.08	0.43	0	0	0	0.12	0	0.23	0	0	0	0	0	0	0	0	0	0
Prev(%)	74.32	51.46	0	0	0	48.51	0	53.53	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.30	0.16	0.01	0.02	0	0	0.01	0.03	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.89	0.39	0.01	0.02	0.01	0.01	0.02	0.08	0	0
Stdev	0.61	0.46	0.02	0.04	0.01	0.01	0.02	0.06	0	0
Prev(%)	72.97	67.65	23.26	51.43	28.57	50.00	39.39	48.39	15.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

Copyright 2007-2025, The Forsyth Institute
Hosted on Amazon AWS EC2

Body Site Legend: