HOMD Banner
Taxonomy: V4.3   |  16S rRNA RefSeq: V16.03   |  Genomic RefSeq: V11.03   |  Viruses: V1.2

PROKKAGenome Explorer: Limosilactobacillus fermentum (GCA_016617695.1)

Select a Genome:
PROKKA Annotations for GCA_016617695.1
Genome Selected: Limosilactobacillus fermentum
ContigsBases CDSrRNA tmRNAtRNA
1 2110953 2041 15 1 59
[Table]   [NA Fasta]   [AA Fasta]      [Browser]   [Text]   [Excel]  
Search & Sort all 2145 Records
Search These Records: Clear
Sort Column:   Molecule   PID   NA   AA   Gene  Gene Product  Reverse
Annotation Table [page:5]    |    Number of Records Found: 2145 [5 Pages]    |    Previous Page <==> Next Page    |    Jump to Page: [ 1  2  3  4  5  ]
Notes:   1- Column headers only sort the current page. 2- Select [NA] or [AA] links to show sequences.
Region Protein-ID Type Genome
Viewer
Range
(bp)
Show Sequences
(length) NA / AA
PROKKA
Gene
PROKKA
GeneProduct
2001 CP067088.1 misc_RNA open 1960084-1960173 TPP
2002 CP067088.1 GCA_016617695.1_02002 CDS open 1960253-1960822 570_na     189_aa ykoE Putative HMPthiamine permease protein YkoE
2003 CP067088.1 GCA_016617695.1_02003 CDS open 1960826-1962208 1383_na     460_aa ykoD Putative HMPthiamine import ATP-binding protein YkoD
2004 CP067088.1 GCA_016617695.1_02004 CDS open 1962198-1962851 654_na     217_aa ykoC Putative HMPthiamine permease protein YkoC
2005 CP067088.1 GCA_016617695.1_02005 CDS open 1962896-1963255 360_na     119_aa hypothetical protein
2006 CP067088.1 GCA_016617695.1_02006 CDS open 1963346-1965307 1962_na     653_aa hypothetical protein
2007 CP067088.1 GCA_016617695.1_02007 CDS open 1965845-1966858 1014_na     337_aa lplJ_2 Lipoate-protein ligase LplJ
2008 CP067088.1 GCA_016617695.1_02008 CDS open 1966870-1967292 423_na     140_aa hypothetical protein
2009 CP067088.1 GCA_016617695.1_02009 CDS open 1967666-1968628 963_na     320_aa menH_2 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase
2010 CP067088.1 GCA_016617695.1_02010 CDS open 1968758-1969183 426_na     141_aa hypothetical protein
2011 CP067088.1 GCA_016617695.1_02011 CDS open 1969180-1970031 852_na     283_aa hypothetical protein
2012 CP067088.1 misc_RNA open 1970319-1970447 Ref68
2013 CP067088.1 GCA_016617695.1_02013 CDS open 1970485-1970961 477_na     158_aa hypothetical protein
2014 CP067088.1 GCA_016617695.1_02014 CDS open 1970968-1971366 399_na     132_aa hypothetical protein
2015 CP067088.1 GCA_016617695.1_02015 CDS open 1971483-1971935 453_na     150_aa Putative universal stress protein
2016 CP067088.1 GCA_016617695.1_02016 CDS open 1971962-1972312 351_na     116_aa hypothetical protein
2017 CP067088.1 GCA_016617695.1_02017 CDS open 1972312-1973310 999_na     332_aa hypothetical protein
2018 CP067088.1 GCA_016617695.1_02018 CDS open 1973525-1974886 1362_na     453_aa glpT Glycerol-3-phosphate transporter
2019 CP067088.1 GCA_016617695.1_02019 CDS open 1975097-1977100 2004_na     667_aa tkt_1 Transketolase
2020 CP067088.1 GCA_016617695.1_02020 CDS open 1977113-1977859 747_na     248_aa tal putative transaldolase
2021 CP067088.1 GCA_016617695.1_02021 CDS open 1978251-1978931 681_na     226_aa rpiA_2 Ribose-5-phosphate isomerase A
2022 CP067088.1 GCA_016617695.1_02022 CDS open 1979221-1980225 1005_na     334_aa tkt_2 Transketolase
2023 CP067088.1 GCA_016617695.1_02023 CDS open 1980438-1981577 1140_na     379_aa IS30 family transposase ISCth3
2024 CP067088.1 GCA_016617695.1_02024 CDS open 1981661-1982359 699_na     232_aa hypothetical protein
2025 CP067088.1 GCA_016617695.1_02025 CDS open 1982356-1983204 849_na     282_aa IS3 family transposase ISSth1b
2026 CP067088.1 misc_RNA open 1983211-1983369 group-II-D1D4-3
2027 CP067088.1 GCA_016617695.1_02027 CDS open 1983504-1984514 1011_na     336_aa nixA Nickel transporter NixA
2028 CP067088.1 GCA_016617695.1_02028 CDS open 1984543-1985370 828_na     275_aa larE Pyridinium-3%2C5-bisthiocarboxylic acid mononucleotide synthase
2029 CP067088.1 GCA_016617695.1_02029 CDS open 1985395-1986105 711_na     236_aa larD DL-lactic acid transporter
2030 CP067088.1 GCA_016617695.1_02030 CDS open 1986107-1987471 1365_na     454_aa larC Pyridinium-3%2C5-bisthiocarboxylic acid mononucleotide nickel insertion protein
2031 CP067088.1 GCA_016617695.1_02031 CDS open 1987471-1988229 759_na     252_aa larB Pyridinium-3%2C5-biscarboxylic acid mononucleotide synthase
2032 CP067088.1 GCA_016617695.1_02032 CDS open 1988237-1989562 1326_na     441_aa larA Lactate racemase
2033 CP067088.1 GCA_016617695.1_02033 CDS open 1989761-1990432 672_na     223_aa larR Lactate racemization regulatory protein
2034 CP067088.1 GCA_016617695.1_02034 CDS open 1991834-1992445 612_na     203_aa insK_5 Putative transposase InsK for insertion sequence element IS150
2035 CP067088.1 GCA_016617695.1_02035 CDS open 1992517-1993704 1188_na     395_aa IS256 family transposase IS1310
2036 CP067088.1 GCA_016617695.1_02036 CDS open 1993794-1994054 261_na     86_aa hypothetical protein
2037 CP067088.1 GCA_016617695.1_02037 CDS open 1994970-1996691 1722_na     573_aa ptsI_2 Phosphoenolpyruvate-protein phosphotransferase
2038 CP067088.1 GCA_016617695.1_02038 CDS open 1996879-1998207 1329_na     442_aa fucP L-fucose-proton symporter
2039 CP067088.1 GCA_016617695.1_02039 CDS open 1998222-1998617 396_na     131_aa rbsD D-ribose pyranase
2040 CP067088.1 GCA_016617695.1_02040 CDS open 1998641-1999558 918_na     305_aa rbsK_2 Ribokinase
2041 CP067088.1 GCA_016617695.1_02041 CDS open 1999804-2000763 960_na     319_aa deoR Deoxyribonucleoside regulator
2042 CP067088.1 GCA_016617695.1_02042 CDS open 2000867-2001520 654_na     217_aa deoC1 Deoxyribose-phosphate aldolase 1
2043 CP067088.1 GCA_016617695.1_02043 CDS open 2001534-2002550 1017_na     338_aa hypothetical protein
2044 CP067088.1 GCA_016617695.1_02044 CDS open 2002584-2003531 948_na     315_aa rbsK_3 Ribokinase
2045 CP067088.1 GCA_016617695.1_02045 CDS open 2003591-2005015 1425_na     474_aa gatC_2 PTS system galactitol-specific EIIC component
2046 CP067088.1 GCA_016617695.1_02046 CDS open 2005213-2006217 1005_na     334_aa kdgR_2 HTH-type transcriptional regulator KdgR
2047 CP067088.1 GCA_016617695.1_02047 CDS open 2006771-2008276 1506_na     501_aa yjeM_2 Inner membrane transporter YjeM
2048 CP067088.1 GCA_016617695.1_02048 CDS open 2008736-2009170 435_na     144_aa hypothetical protein
2049 CP067088.1 GCA_016617695.1_02049 CDS open 2009450-2011849 2400_na     799_aa xpkA Xylulose-5-phosphate phosphoketolase
2050 CP067088.1 GCA_016617695.1_02050 CDS open 2012055-2012852 798_na     265_aa ybjI_2 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YbjI
2051 CP067088.1 GCA_016617695.1_02051 CDS open 2012859-2013587 729_na     242_aa gmuR HTH-type transcriptional regulator GmuR
2052 CP067088.1 GCA_016617695.1_02052 CDS open 2013731-2014231 501_na     166_aa ybaK Cys-tRNA(Pro)Cys-tRNA(Cys) deacylase YbaK
2053 CP067088.1 GCA_016617695.1_02053 CDS open 2014235-2014978 744_na     247_aa hypothetical protein
2054 CP067088.1 GCA_016617695.1_02054 CDS open 2015038-2016474 1437_na     478_aa pepDA_2 Dipeptidase A
2055 CP067088.1 GCA_016617695.1_02055 CDS open 2016717-2017529 813_na     270_aa hypothetical protein
2056 CP067088.1 GCA_016617695.1_02056 CDS open 2017789-2018304 516_na     171_aa hypothetical protein
2057 CP067088.1 GCA_016617695.1_02057 CDS open 2018314-2018838 525_na     174_aa hypothetical protein
2058 CP067088.1 GCA_016617695.1_02058 CDS open 2018990-2020375 1386_na     461_aa hypothetical protein
2059 CP067088.1 GCA_016617695.1_02059 CDS open 2020462-2020926 465_na     154_aa Putative NrdI-like protein
2060 CP067088.1 GCA_016617695.1_02060 CDS open 2021171-2021602 432_na     143_aa hypothetical protein
2061 CP067088.1 GCA_016617695.1_02061 CDS open 2021795-2022964 1170_na     389_aa yycB putative transporter YycB
2062 CP067088.1 GCA_016617695.1_02062 CDS open 2023455-2024936 1482_na     493_aa zwf Glucose-6-phosphate 1-dehydrogenase
2063 CP067088.1 GCA_016617695.1_02063 CDS open 2025121-2026560 1440_na     479_aa gnd 6-phosphogluconate dehydrogenase%2C decarboxylating
2064 CP067088.1 GCA_016617695.1_02064 CDS open 2026815-2027288 474_na     157_aa Putative universal stress protein
2065 CP067088.1 GCA_016617695.1_02065 CDS open 2027450-2027905 456_na     151_aa lrpC HTH-type transcriptional regulator LrpC
2066 CP067088.1 GCA_016617695.1_02066 CDS open 2028064-2028831 768_na     255_aa kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
2067 CP067088.1 GCA_016617695.1_02067 CDS open 2028848-2029849 1002_na     333_aa kdgR_3 HTH-type transcriptional regulator KdgR
2068 CP067088.1 GCA_016617695.1_02068 CDS open 2030121-2031929 1809_na     602_aa pepF1 Oligoendopeptidase F%2C plasmid
2069 CP067088.1 GCA_016617695.1_02069 CDS open 2031932-2033224 1293_na     430_aa gltT Protonsodium-glutamate symport protein
2070 CP067088.1 GCA_016617695.1_02070 CDS open 2033472-2034143 672_na     223_aa hypothetical protein
2071 CP067088.1 GCA_016617695.1_02071 CDS open 2035797-2037476 1680_na     559_aa dld Quinone-dependent D-lactate dehydrogenase
2072 CP067088.1 GCA_016617695.1_02072 CDS open 2037384-2037953 570_na     189_aa hypothetical protein
2073 CP067088.1 GCA_016617695.1_02073 CDS open 2038058-2038717 660_na     219_aa ribB 3%2C4-dihydroxy-2-butanone 4-phosphate synthase
2074 CP067088.1 GCA_016617695.1_02074 CDS open 2039268-2039546 279_na     92_aa hypothetical protein
2075 CP067088.1 GCA_016617695.1_02075 CDS open 2040041-2040430 390_na     129_aa hypothetical protein
2076 CP067088.1 GCA_016617695.1_02076 CDS open 2040687-2042036 1350_na     449_aa nox_2 NADH oxidase
2077 CP067088.1 GCA_016617695.1_02077 CDS open 2042679-2042927 249_na     82_aa hypothetical protein
2078 CP067088.1 GCA_016617695.1_02078 CDS open 2043729-2044523 795_na     264_aa budC_2 Diacetyl reductase [(S)-acetoin forming]
2079 CP067088.1 GCA_016617695.1_02079 CDS open 2044634-2044804 171_na     56_aa hypothetical protein
2080 CP067088.1 GCA_016617695.1_02080 CDS open 2045097-2045678 582_na     193_aa bin3 Putative transposon Tn552 DNA-invertase bin3
2081 CP067088.1 GCA_016617695.1_02081 CDS open 2046007-2046678 672_na     223_aa hrtA Putative hemin import ATP-binding protein HrtA
2082 CP067088.1 GCA_016617695.1_02082 CDS open 2046683-2047729 1047_na     348_aa hypothetical protein
2083 CP067088.1 GCA_016617695.1_02083 CDS open 2048009-2048218 210_na     69_aa hypothetical protein
2084 CP067088.1 GCA_016617695.1_02084 CDS open 2048440-2048874 435_na     144_aa hypothetical protein
2085 CP067088.1 GCA_016617695.1_02085 CDS open 2049135-2049983 849_na     282_aa IS3 family transposase ISSth1b
2086 CP067088.1 GCA_016617695.1_02086 CDS open 2050239-2052182 1944_na     647_aa lacS_2 Lactose permease
2087 CP067088.1 GCA_016617695.1_02087 CDS open 2052258-2054480 2223_na     740_aa agaA Alpha-galactosidase AgaA
2088 CP067088.1 GCA_016617695.1_02088 CDS open 2054559-2055557 999_na     332_aa IS30 family transposase ISSlu1
2089 CP067088.1 GCA_016617695.1_02089 CDS open 2055817-2056818 1002_na     333_aa melR HTH-type transcriptional repressor MelR
2090 CP067088.1 GCA_016617695.1_02090 CDS open 2056846-2058300 1455_na     484_aa galT Galactose-1-phosphate uridylyltransferase
2091 CP067088.1 GCA_016617695.1_02091 CDS open 2058328-2059494 1167_na     388_aa galK_2 Galactokinase
2092 CP067088.1 GCA_016617695.1_02092 CDS open 2059666-2060616 951_na     316_aa hypothetical protein
2093 CP067088.1 GCA_016617695.1_02093 CDS open 2060622-2061410 789_na     262_aa iphP Tyrosine-protein phosphatase
2094 CP067088.1 GCA_016617695.1_02094 CDS open 2061429-2061941 513_na     170_aa hypothetical protein
2095 CP067088.1 GCA_016617695.1_02095 CDS open 2061954-2062178 225_na     74_aa hypothetical protein
2096 CP067088.1 GCA_016617695.1_02096 CDS open 2062294-2063028 735_na     244_aa artM_2 Arginine transport ATP-binding protein ArtM
2097 CP067088.1 GCA_016617695.1_02097 CDS open 2063030-2063719 690_na     229_aa tcyB_2 L-cystine transport system permease protein TcyB
2098 CP067088.1 GCA_016617695.1_02098 CDS open 2063822-2064622 801_na     266_aa putative amino-acid ABC transporter-binding protein
2099 CP067088.1 GCA_016617695.1_02099 CDS open 2064761-2065087 327_na     108_aa hypothetical protein
2100 CP067088.1 GCA_016617695.1_02100 CDS open 2065189-2066127 939_na     312_aa ghrB Glyoxylatehydroxypyruvate reductase B
2101 CP067088.1 GCA_016617695.1_02101 CDS open 2066129-2066611 483_na     160_aa greA_2 Transcription elongation factor GreA
2102 CP067088.1 GCA_016617695.1_02102 CDS open 2066828-2067622 795_na     264_aa hypothetical protein
2103 CP067088.1 GCA_016617695.1_02103 CDS open 2067729-2068238 510_na     169_aa ymdB O-acetyl-ADP-ribose deacetylase
2104 CP067088.1 GCA_016617695.1_02104 CDS open 2068247-2070151 1905_na     634_aa pepO Neutral endopeptidase
2105 CP067088.1 GCA_016617695.1_02105 CDS open 2070411-2071721 1311_na     436_aa pbuG Guaninehypoxanthine permease PbuG
2106 CP067088.1 GCA_016617695.1_02106 CDS open 2071818-2072102 285_na     94_aa hypothetical protein
2107 CP067088.1 GCA_016617695.1_02107 CDS open 2072104-2073303 1200_na     399_aa hypothetical protein
2108 CP067088.1 GCA_016617695.1_02108 CDS open 2073257-2074399 1143_na     380_aa hypothetical protein
2109 CP067088.1 GCA_016617695.1_02109 CDS open 2074401-2075030 630_na     209_aa Putative 3-methyladenine DNA glycosylase
2110 CP067088.1 GCA_016617695.1_02110 CDS open 2075093-2075458 366_na     121_aa hypothetical protein
2111 CP067088.1 GCA_016617695.1_02111 CDS open 2075749-2075934 186_na     61_aa hypothetical protein
2112 CP067088.1 GCA_016617695.1_02112 CDS open 2075935-2076609 675_na     224_aa kefG Glutathione-regulated potassium-efflux system ancillary protein KefG
2113 CP067088.1 GCA_016617695.1_02113 CDS open 2076612-2076935 324_na     107_aa hypothetical protein
2114 CP067088.1 GCA_016617695.1_02114 CDS open 2077029-2077655 627_na     208_aa nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr
2115 CP067088.1 GCA_016617695.1_02115 CDS open 2077836-2078393 558_na     185_aa efp Elongation factor P
2116 CP067088.1 GCA_016617695.1_02116 CDS open 2078540-2079172 633_na     210_aa hypothetical protein
2117 CP067088.1 GCA_016617695.1_02117 CDS open 2079351-2079542 192_na     63_aa hypothetical protein
2118 CP067088.1 GCA_016617695.1_02118 CDS open 2079589-2080359 771_na     256_aa purR_3 HTH-type transcriptional repressor PurR
2119 CP067088.1 GCA_016617695.1_02119 CDS open 2080788-2082851 2064_na     687_aa hypothetical protein
2120 CP067088.1 GCA_016617695.1_02120 CDS open 2082988-2083290 303_na     100_aa ziaR Transcriptional repressor SmtB
2121 CP067088.1 GCA_016617695.1_02121 CDS open 2083633-2084883 1251_na     416_aa IS200IS605 family transposase ISLjo5
2122 CP067088.1 GCA_016617695.1_02122 CDS open 2084957-2085412 456_na     151_aa hypothetical protein
2123 CP067088.1 GCA_016617695.1_02123 CDS open 2085478-2085936 459_na     152_aa argR_2 Arginine repressor
2124 CP067088.1 GCA_016617695.1_02124 CDS open 2086119-2086790 672_na     223_aa lolD Lipoprotein-releasing system ATP-binding protein LolD
2125 CP067088.1 GCA_016617695.1_02125 CDS open 2086803-2087828 1026_na     341_aa hypothetical protein
2126 CP067088.1 GCA_016617695.1_02126 CDS open 2087788-2088390 603_na     200_aa hypothetical protein
2127 CP067088.1 GCA_016617695.1_02127 CDS open 2088547-2089557 1011_na     336_aa rspB Starvation-sensing protein RspB
2128 CP067088.1 GCA_016617695.1_02128 CDS open 2089853-2091415 1563_na     520_aa mntH_2 Divalent metal cation transporter MntH
2129 CP067088.1 GCA_016617695.1_02129 CDS open 2091799-2092536 738_na     245_aa hypothetical protein
2130 CP067088.1 GCA_016617695.1_02130 CDS open 2092852-2094657 1806_na     601_aa thrS Threonine--tRNA ligase
2131 CP067088.1 GCA_016617695.1_02131 CDS open 2094802-2095401 600_na     199_aa hypothetical protein
2132 CP067088.1 GCA_016617695.1_02132 CDS open 2095407-2096285 879_na     292_aa hypothetical protein
2133 CP067088.1 GCA_016617695.1_02133 CDS open 2096480-2097091 612_na     203_aa spsB Signal peptidase IB
2134 CP067088.1 GCA_016617695.1_02134 CDS open 2097166-2098722 1557_na     518_aa murE_1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
2135 CP067088.1 GCA_016617695.1_02135 CDS open 2098727-2100262 1536_na     511_aa murE_2 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
2136 CP067088.1 GCA_016617695.1_02136 CDS open 2100262-2102172 1911_na     636_aa asnB_2 Asparagine synthetase [glutamine-hydrolyzing] 1
2137 CP067088.1 GCA_016617695.1_02137 CDS open 2102434-2103900 1467_na     488_aa lysP_2 Lysine-specific permease
2138 CP067088.1 GCA_016617695.1_02138 CDS open 2104011-2104388 378_na     125_aa mscL Large-conductance mechanosensitive channel
2139 CP067088.1 GCA_016617695.1_02139 CDS open 2104648-2106552 1905_na     634_aa mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
2140 CP067088.1 GCA_016617695.1_02140 CDS open 2106567-2107955 1389_na     462_aa mnmE tRNA modification GTPase MnmE
2141 CP067088.1 GCA_016617695.1_02141 CDS open 2108101-2108961 861_na     286_aa hypothetical protein
2142 CP067088.1 GCA_016617695.1_02142 CDS open 2108992-2109825 834_na     277_aa misCA Membrane protein insertase MisCA
2143 CP067088.1 GCA_016617695.1_02143 CDS open 2109841-2110185 345_na     114_aa rnpA Ribonuclease P protein component
2144 CP067088.1 GCA_016617695.1_02144 CDS open 2110301-2110435 135_na     44_aa rpmH 50S ribosomal protein L34
2145 CP067088.1 GCA_016617695.1_02145 CDS open 2110509-2110871 363_na     120_aa hypothetical protein