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Taxonomy: V4.3   |  16S rRNA RefSeq: V16.03   |  Genomic RefSeq: V11.03   |  Viruses: V1.2

PROKKAGenome Explorer: Limosilactobacillus fermentum (GCA_029223925.1)

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PROKKA Annotations for GCA_029223925.1
Genome Selected: Limosilactobacillus fermentum
ContigsBases CDSrRNA tmRNAtRNA
1 2077616 2040 15 1 59
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Annotation Table [page:5]    |    Number of Records Found: 2145 [5 Pages]    |    Previous Page <==> Next Page    |    Jump to Page: [ 1  2  3  4  5  ]
Notes:   1- Column headers only sort the current page. 2- Select [NA] or [AA] links to show sequences.
Region Protein-ID Type Genome
Viewer		 Range
(bp)		 Show Sequences
(length) NA / AA		 PROKKA
Gene		 PROKKA
GeneProduct
2001 CP119425.1 GCA_029223925.1_02001 CDS open 1923389-1923919 531_na     176_aa ybhF putative multidrug ABC transporter ATP-binding protein YbhF
2002 CP119425.1 GCA_029223925.1_02002 CDS open 1924113-1925087 975_na     324_aa guaC GMP reductase
2003 CP119425.1 GCA_029223925.1_02003 CDS open 1925286-1926575 1290_na     429_aa purA Adenylosuccinate synthetase
2004 CP119425.1 GCA_029223925.1_02004 CDS open 1926903-1928285 1383_na     460_aa sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad
2005 CP119425.1 GCA_029223925.1_02005 CDS open 1928569-1929108 540_na     179_aa pyrR Bifunctional protein pyrR
2006 CP119425.1 GCA_029223925.1_02006 CDS open 1929228-1929959 732_na     243_aa pyrF Orotidine 5-phosphate decarboxylase
2007 CP119425.1 GCA_029223925.1_02007 CDS open 1929959-1930585 627_na     208_aa pyrE_2 Orotate phosphoribosyltransferase
2008 CP119425.1 GCA_029223925.1_02008 CDS open 1931251-1932426 1176_na     391_aa IS200IS605 family transposase ISLhe65
2009 CP119425.1 GCA_029223925.1_02009 CDS open 1932883-1933275 393_na     130_aa hypothetical protein
2010 CP119425.1 GCA_029223925.1_02010 CDS open 1933418-1934956 1539_na     512_aa gtfA_1 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase GtfA subunit
2011 CP119425.1 GCA_029223925.1_02011 CDS open 1934956-1936452 1497_na     498_aa gtfA_2 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase GtfA subunit
2012 CP119425.1 misc_RNA open 1936544-1936781 T-box
2013 CP119425.1 GCA_029223925.1_02013 CDS open 1936862-1937704 843_na     280_aa metQ_2 D-methionine-binding lipoprotein MetQ
2014 CP119425.1 GCA_029223925.1_02014 CDS open 1937730-1938794 1065_na     354_aa metN Methionine import ATP-binding protein MetN
2015 CP119425.1 GCA_029223925.1_02015 CDS open 1938787-1939488 702_na     233_aa metP Methionine import system permease protein MetP
2016 CP119425.1 GCA_029223925.1_02016 CDS open 1939615-1940763 1149_na     382_aa dapE_3 putative succinyl-diaminopimelate desuccinylase
2017 CP119425.1 GCA_029223925.1_02017 CDS open 1940946-1942370 1425_na     474_aa rlmCD_2 23S rRNA (uracil-C(5))-methyltransferase RlmCD
2018 CP119425.1 GCA_029223925.1_02018 CDS open 1942824-1943309 486_na     161_aa brnQ_2 Branched-chain amino acid transport system 2 carrier protein
2019 CP119425.1 GCA_029223925.1_02019 CDS open 1943574-1944263 690_na     229_aa IS30 family transposase ISSlu1
2020 CP119425.1 GCA_029223925.1_02020 CDS open 1944619-1945998 1380_na     459_aa aspA Aspartate ammonia-lyase
2021 CP119425.1 GCA_029223925.1_02021 CDS open 1946297-1947436 1140_na     379_aa IS30 family transposase ISCth3
2022 CP119425.1 GCA_029223925.1_02022 CDS open 1947513-1947944 432_na     143_aa IS5 family transposase ISLpl3
2023 CP119425.1 GCA_029223925.1_02023 CDS open 1947917-1948288 372_na     123_aa IS5 family transposase ISLpl3
2024 CP119425.1 GCA_029223925.1_02024 CDS open 1948839-1950767 1929_na     642_aa yxdM ABC transporter permease protein YxdM
2025 CP119425.1 GCA_029223925.1_02025 CDS open 1950770-1951525 756_na     251_aa yxdL ABC transporter ATP-binding protein YxdL
2026 CP119425.1 GCA_029223925.1_02026 CDS open 1951626-1952591 966_na     321_aa graS Sensor histidine kinase GraS
2027 CP119425.1 GCA_029223925.1_02027 CDS open 1952584-1953264 681_na     226_aa graR Response regulator protein GraR
2028 CP119425.1 GCA_029223925.1_02028 CDS open 1953497-1954153 657_na     218_aa cynR_2 HTH-type transcriptional regulator CynR
2029 CP119425.1 GCA_029223925.1_02029 CDS open 1954401-1954853 453_na     150_aa hypothetical protein
2030 CP119425.1 GCA_029223925.1_02030 CDS open 1955527-1956747 1221_na     406_aa IS256 family transposase ISCARN68
2031 CP119425.1 GCA_029223925.1_02031 CDS open 1956823-1957719 897_na     298_aa brnQ_3 Branched-chain amino acid transport system 2 carrier protein
2032 CP119425.1 GCA_029223925.1_02032 CDS open 1957807-1958754 948_na     315_aa iolS_2 Aldo-keto reductase IolS
2033 CP119425.1 GCA_029223925.1_02033 CDS open 1958872-1960164 1293_na     430_aa dltD Protein DltD
2034 CP119425.1 GCA_029223925.1_02034 CDS open 1960178-1960414 237_na     78_aa dltC D-alanyl carrier protein
2035 CP119425.1 GCA_029223925.1_02035 CDS open 1960444-1961670 1227_na     408_aa hypothetical protein
2036 CP119425.1 GCA_029223925.1_02036 CDS open 1961670-1963199 1530_na     509_aa dltA D-alanine--D-alanyl carrier protein ligase
2037 CP119425.1 GCA_029223925.1_02037 CDS open 1963214-1963345 132_na     43_aa hypothetical protein
2038 CP119425.1 GCA_029223925.1_02038 CDS open 1963571-1964704 1134_na     377_aa sbcD Nuclease SbcCD subunit D
2039 CP119425.1 GCA_029223925.1_02039 CDS open 1964701-1967805 3105_na     1034_aa sbcC Nuclease SbcCD subunit C
2040 CP119425.1 GCA_029223925.1_02040 CDS open 1968094-1969392 1299_na     432_aa serS Serine--tRNA ligase
2041 CP119425.1 tRNA open 1969704-1969776 tRNA-Glu(ttc)
2042 CP119425.1 GCA_029223925.1_02042 CDS open 1969895-1970908 1014_na     337_aa trpS2 Tryptophan--tRNA ligase 2
2043 CP119425.1 tRNA open 1971364-1971440 tRNA-Pro(cgg)
2044 CP119425.1 GCA_029223925.1_02044 CDS open 1972888-1974342 1455_na     484_aa mltF Membrane-bound lytic murein transglycosylase F
2045 CP119425.1 GCA_029223925.1_02045 CDS open 1974346-1975089 744_na     247_aa glnQ_3 Glutamine transport ATP-binding protein GlnQ
2046 CP119425.1 GCA_029223925.1_02046 CDS open 1975548-1976921 1374_na     457_aa cycA_2 D-serineD-alanineglycine transporter
2047 CP119425.1 GCA_029223925.1_02047 CDS open 1977822-1979021 1200_na     399_aa nupG Purine nucleoside transport protein NupG
2048 CP119425.1 GCA_029223925.1_02048 CDS open 1979257-1980177 921_na     306_aa rihC Non-specific ribonucleoside hydrolase RihC
2049 CP119425.1 GCA_029223925.1_02049 CDS open 1980366-1981103 738_na     245_aa rsmG Ribosomal RNA small subunit methyltransferase G
2050 CP119425.1 GCA_029223925.1_02050 CDS open 1981122-1982057 936_na     311_aa noc Nucleoid occlusion protein
2051 CP119425.1 GCA_029223925.1_02051 CDS open 1982071-1982904 834_na     277_aa spo0J Stage 0 sporulation protein J
2052 CP119425.1 GCA_029223925.1_02052 CDS open 1982917-1983117 201_na     66_aa hypothetical protein
2053 CP119425.1 GCA_029223925.1_02053 CDS open 1983133-1984230 1098_na     365_aa ychF Ribosome-binding ATPase YchF
2054 CP119425.1 GCA_029223925.1_02054 CDS open 1984264-1985037 774_na     257_aa hypothetical protein
2055 CP119425.1 GCA_029223925.1_02055 CDS open 1985299-1986441 1143_na     380_aa IMPDH_2 Inosine-5-monophosphate dehydrogenase
2056 CP119425.1 GCA_029223925.1_02056 CDS open 1986788-1987795 1008_na     335_aa tagU_2 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU
2057 CP119425.1 GCA_029223925.1_02057 CDS open 1987795-1988565 771_na     256_aa hypothetical protein
2058 CP119425.1 GCA_029223925.1_02058 CDS open 1988582-1989322 741_na     246_aa ywqD Tyrosine-protein kinase YwqD
2059 CP119425.1 GCA_029223925.1_02059 CDS open 1989349-1990119 771_na     256_aa ywqE Tyrosine-protein phosphatase YwqE
2060 CP119425.1 GCA_029223925.1_02060 CDS open 1990149-1990775 627_na     208_aa pglC Undecaprenyl phosphate N%2CN-diacetylbacillosamine 1-phosphate transferase
2061 CP119425.1 GCA_029223925.1_02061 CDS open 1990819-1991910 1092_na     363_aa wbnH O-antigen biosynthesis glycosyltransferase WbnH
2062 CP119425.1 GCA_029223925.1_02062 CDS open 1991924-1992913 990_na     329_aa hypothetical protein
2063 CP119425.1 GCA_029223925.1_02063 CDS open 1992928-1994034 1107_na     368_aa hypothetical protein
2064 CP119425.1 GCA_029223925.1_02064 CDS open 1994114-1995094 981_na     326_aa hypothetical protein
2065 CP119425.1 GCA_029223925.1_02065 CDS open 1995109-1996227 1119_na     372_aa epsF_2 Putative glycosyltransferase EpsF
2066 CP119425.1 GCA_029223925.1_02066 CDS open 1996314-1997819 1506_na     501_aa hypothetical protein
2067 CP119425.1 GCA_029223925.1_02067 CDS open 1997853-1998722 870_na     289_aa rfbA Glucose-1-phosphate thymidylyltransferase 1
2068 CP119425.1 GCA_029223925.1_02068 CDS open 1998726-1999307 582_na     193_aa rfbC dTDP-4-dehydrorhamnose 3%2C5-epimerase
2069 CP119425.1 GCA_029223925.1_02069 CDS open 1999318-2000349 1032_na     343_aa rmlB dTDP-glucose 4%2C6-dehydratase
2070 CP119425.1 GCA_029223925.1_02070 CDS open 2000412-2001269 858_na     285_aa rmlD dTDP-4-dehydrorhamnose reductase
2071 CP119425.1 GCA_029223925.1_02071 CDS open 2001274-2002260 987_na     328_aa hypothetical protein
2072 CP119425.1 GCA_029223925.1_02072 CDS open 2002386-2002892 507_na     168_aa hypothetical protein
2073 CP119425.1 GCA_029223925.1_02073 CDS open 2003080-2003778 699_na     232_aa phoP_2 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
2074 CP119425.1 GCA_029223925.1_02074 CDS open 2003976-2005118 1143_na     380_aa sasA_3 Adaptive-response sensory-kinase SasA
2075 CP119425.1 misc_RNA open 2004327-2004392 Bacillus-plasmid
2076 CP119425.1 GCA_029223925.1_02076 CDS open 2005118-2006413 1296_na     431_aa dacA_3 D-alanyl-D-alanine carboxypeptidase DacA
2077 CP119425.1 GCA_029223925.1_02077 CDS open 2006756-2007631 876_na     291_aa hypothetical protein
2078 CP119425.1 GCA_029223925.1_02078 CDS open 2007631-2008050 420_na     139_aa hypothetical protein
2079 CP119425.1 GCA_029223925.1_02079 CDS open 2008234-2008779 546_na     181_aa ydeN Putative hydrolase YdeN
2080 CP119425.1 GCA_029223925.1_02080 CDS open 2009170-2010384 1215_na     404_aa cfa Cyclopropane-fatty-acyl-phospholipid synthase
2081 CP119425.1 GCA_029223925.1_02081 CDS open 2010518-2010649 132_na     43_aa hypothetical protein
2082 CP119425.1 GCA_029223925.1_02082 CDS open 2010851-2011891 1041_na     346_aa hypothetical protein
2083 CP119425.1 GCA_029223925.1_02083 CDS open 2011979-2013640 1662_na     553_aa fhs1 Formate--tetrahydrofolate ligase 1
2084 CP119425.1 GCA_029223925.1_02084 CDS open 2013927-2014412 486_na     161_aa purE N5-carboxyaminoimidazole ribonucleotide mutase
2085 CP119425.1 GCA_029223925.1_02085 CDS open 2014396-2015535 1140_na     379_aa purK_2 N5-carboxyaminoimidazole ribonucleotide synthase
2086 CP119425.1 GCA_029223925.1_02086 CDS open 2015554-2016849 1296_na     431_aa purB Adenylosuccinate lyase
2087 CP119425.1 GCA_029223925.1_02087 CDS open 2017213-2018229 1017_na     338_aa hypothetical protein
2088 CP119425.1 GCA_029223925.1_02088 CDS open 2018241-2019788 1548_na     515_aa hypothetical protein
2089 CP119425.1 GCA_029223925.1_02089 CDS open 2020197-2020919 723_na     240_aa purC Phosphoribosylaminoimidazole-succinocarboxamide synthase
2090 CP119425.1 GCA_029223925.1_02090 CDS open 2020922-2021164 243_na     80_aa purS Phosphoribosylformylglycinamidine synthase subunit PurS
2091 CP119425.1 GCA_029223925.1_02091 CDS open 2021165-2021845 681_na     226_aa purQ Phosphoribosylformylglycinamidine synthase subunit PurQ
2092 CP119425.1 GCA_029223925.1_02092 CDS open 2021849-2024074 2226_na     741_aa purL Phosphoribosylformylglycinamidine synthase subunit PurL
2093 CP119425.1 GCA_029223925.1_02093 CDS open 2024050-2025513 1464_na     487_aa purF Amidophosphoribosyltransferase
2094 CP119425.1 GCA_029223925.1_02094 CDS open 2025513-2026550 1038_na     345_aa purM Phosphoribosylformylglycinamidine cyclo-ligase
2095 CP119425.1 GCA_029223925.1_02095 CDS open 2026559-2027140 582_na     193_aa purN Phosphoribosylglycinamide formyltransferase
2096 CP119425.1 GCA_029223925.1_02096 CDS open 2027142-2028677 1536_na     511_aa purH Bifunctional purine biosynthesis protein PurH
2097 CP119425.1 GCA_029223925.1_02097 CDS open 2028951-2030225 1275_na     424_aa purD Phosphoribosylamine--glycine ligase
2098 CP119425.1 GCA_029223925.1_02098 CDS open 2030559-2030702 144_na     47_aa hypothetical protein
2099 CP119425.1 GCA_029223925.1_02099 CDS open 2030777-2032027 1251_na     416_aa IS200IS605 family transposase ISMmu1
2100 CP119425.1 GCA_029223925.1_02100 CDS open 2032444-2033139 696_na     231_aa gpmA_5 2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase
2101 CP119425.1 GCA_029223925.1_02101 CDS open 2033263-2034441 1179_na     392_aa dapX_3 putative N-acetyl-LL-diaminopimelate aminotransferase
2102 CP119425.1 GCA_029223925.1_02102 CDS open 2034554-2035558 1005_na     334_aa hypothetical protein
2103 CP119425.1 GCA_029223925.1_02103 CDS open 2036044-2036415 372_na     123_aa hypothetical protein
2104 CP119425.1 GCA_029223925.1_02104 CDS open 2036429-2036737 309_na     102_aa hypothetical protein
2105 CP119425.1 GCA_029223925.1_02105 CDS open 2036737-2038668 1932_na     643_aa copA Copper-exporting P-type ATPase
2106 CP119425.1 GCA_029223925.1_02106 CDS open 2038949-2040331 1383_na     460_aa mdtD_2 Putative multidrug resistance protein MdtD
2107 CP119425.1 GCA_029223925.1_02107 CDS open 2040379-2040855 477_na     158_aa hypothetical protein
2108 CP119425.1 rRNA open 2041416-2042988 16S ribosomal RNA
2109 CP119425.1 rRNA open 2043188-2046104 23S ribosomal RNA
2110 CP119425.1 rRNA open 2046174-2046285 5S ribosomal RNA
2111 CP119425.1 tRNA open 2046355-2046428 tRNA-Thr(agt)
2112 CP119425.1 GCA_029223925.1_02112 CDS open 2046829-2047314 486_na     161_aa hypothetical protein
2113 CP119425.1 GCA_029223925.1_02113 CDS open 2047476-2047940 465_na     154_aa hypothetical protein
2114 CP119425.1 GCA_029223925.1_02114 CDS open 2048348-2048719 372_na     123_aa IS5 family transposase ISLpl3
2115 CP119425.1 GCA_029223925.1_02115 CDS open 2048692-2049123 432_na     143_aa IS5 family transposase ISLpl3
2116 CP119425.1 GCA_029223925.1_02116 CDS open 2049116-2049385 270_na     89_aa hypothetical protein
2117 CP119425.1 GCA_029223925.1_02117 CDS open 2049467-2049943 477_na     158_aa IS200IS605 family transposase ISBth17
2118 CP119425.1 GCA_029223925.1_02118 CDS open 2049906-2050151 246_na     81_aa hypothetical protein
2119 CP119425.1 GCA_029223925.1_02119 CDS open 2050881-2051516 636_na     211_aa hypothetical protein
2120 CP119425.1 GCA_029223925.1_02120 CDS open 2051642-2052031 390_na     129_aa hypothetical protein
2121 CP119425.1 GCA_029223925.1_02121 CDS open 2052138-2052533 396_na     131_aa hypothetical protein
2122 CP119425.1 GCA_029223925.1_02122 CDS open 2052768-2053424 657_na     218_aa fbiB Bifunctional F420 biosynthesis protein FbiB
2123 CP119425.1 GCA_029223925.1_02123 CDS open 2053657-2053968 312_na     103_aa hypothetical protein
2124 CP119425.1 GCA_029223925.1_02124 CDS open 2053965-2054093 129_na     42_aa hypothetical protein
2125 CP119425.1 GCA_029223925.1_02125 CDS open 2054184-2055005 822_na     273_aa dkgA_2 2%2C5-diketo-D-gluconic acid reductase A
2126 CP119425.1 GCA_029223925.1_02126 CDS open 2055068-2055262 195_na     64_aa hypothetical protein
2127 CP119425.1 GCA_029223925.1_02127 CDS open 2055295-2055426 132_na     43_aa hypothetical protein
2128 CP119425.1 GCA_029223925.1_02128 CDS open 2055578-2055946 369_na     122_aa hypothetical protein
2129 CP119425.1 GCA_029223925.1_02129 CDS open 2056752-2057318 567_na     188_aa hypothetical protein
2130 CP119425.1 GCA_029223925.1_02130 CDS open 2057416-2057868 453_na     150_aa hypothetical protein
2131 CP119425.1 GCA_029223925.1_02131 CDS open 2057947-2059197 1251_na     416_aa IS200IS605 family transposase ISMmu1
2132 CP119425.1 GCA_029223925.1_02132 CDS open 2059547-2059885 339_na     112_aa hypothetical protein
2133 CP119425.1 misc_RNA open 2059922-2060010 TPP
2134 CP119425.1 GCA_029223925.1_02134 CDS open 2060439-2061968 1530_na     509_aa hypothetical protein
2135 CP119425.1 GCA_029223925.1_02135 CDS open 2062163-2064025 1863_na     620_aa hypothetical protein
2136 CP119425.1 GCA_029223925.1_02136 CDS open 2064015-2064806 792_na     263_aa hypothetical protein
2137 CP119425.1 GCA_029223925.1_02137 CDS open 2064821-2065699 879_na     292_aa isdE High-affinity heme uptake system protein IsdE
2138 CP119425.1 GCA_029223925.1_02138 CDS open 2065701-2066627 927_na     308_aa isdF putative heme-iron transport system permease protein IsdF
2139 CP119425.1 GCA_029223925.1_02139 CDS open 2066620-2067381 762_na     253_aa fepC Ferric enterobactin transport ATP-binding protein FepC
2140 CP119425.1 GCA_029223925.1_02140 CDS open 2067618-2068922 1305_na     434_aa kgtP Alpha-ketoglutarate permease
2141 CP119425.1 GCA_029223925.1_02141 CDS open 2069324-2069773 450_na     149_aa hypothetical protein
2142 CP119425.1 GCA_029223925.1_02142 CDS open 2069848-2071098 1251_na     416_aa IS200IS605 family transposase ISMmu1
2143 CP119425.1 GCA_029223925.1_02143 CDS open 2071267-2072064 798_na     265_aa hypothetical protein
2144 CP119425.1 GCA_029223925.1_02144 CDS open 2072061-2076158 4098_na     1365_aa hypothetical protein
2145 CP119425.1 GCA_029223925.1_02145 CDS open 2076370-2077209 840_na     279_aa exoA Exodeoxyribonuclease